Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1273 and SMa1276 are separated by 24 nucleotides SMa1276 and SMa1279 are separated by 458 nucleotides
SMa1273: SMa1273 - NorB nitric oxide reductase, large subunit, at 696,686 to 698,032
SMa1273
SMa1276: SMa1276 - NorC nitric oxide reductase, small subunit, at 698,057 to 698,509
SMa1276
SMa1279: SMa1279 - NorE accessory protein for nitric oxide reductase, at 698,968 to 699,534
SMa1279
Position (kb) 698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 697.086 kb on + strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.108 kb on + strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.317 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.485 kb on + strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.495 kb on - strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.611 kb on - strand, within SMa1273 at 697.789 kb on - strand, within SMa1273 at 697.789 kb on - strand, within SMa1273 at 697.821 kb on + strand, within SMa1273 at 697.821 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.824 kb on + strand, within SMa1273 at 697.825 kb on - strand, within SMa1273 at 697.825 kb on - strand, within SMa1273 at 697.932 kb on + strand at 697.932 kb on + strand at 697.933 kb on - strand at 697.998 kb on + strand at 698.290 kb on - strand, within SMa1276 at 698.311 kb on + strand, within SMa1276 at 698.406 kb on + strand, within SMa1276 at 698.407 kb on - strand, within SMa1276 at 698.407 kb on - strand, within SMa1276 at 698.409 kb on + strand, within SMa1276 at 698.409 kb on + strand, within SMa1276 at 698.616 kb on + strand at 698.617 kb on - strand at 698.617 kb on - strand at 698.921 kb on + strand at 698.978 kb on + strand at 698.979 kb on - strand at 698.979 kb on - strand at 699.082 kb on + strand, within SMa1279 at 699.082 kb on + strand, within SMa1279 at 699.082 kb on + strand, within SMa1279 at 699.135 kb on - strand, within SMa1279 at 699.197 kb on + strand, within SMa1279 at 699.417 kb on + strand, within SMa1279
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 697,086 + SMa1273 0.30 -0.2 697,086 + SMa1273 0.30 -0.3 697,089 + SMa1273 0.30 -0.3 697,089 + SMa1273 0.30 -0.3 697,090 - SMa1273 0.30 -0.7 697,090 - SMa1273 0.30 +1.0 697,090 - SMa1273 0.30 +0.6 697,090 - SMa1273 0.30 -0.1 697,090 - SMa1273 0.30 +1.3 697,108 + SMa1273 0.31 +0.3 697,315 - SMa1273 0.47 -0.2 697,315 - SMa1273 0.47 +0.5 697,317 + SMa1273 0.47 +0.6 697,371 + SMa1273 0.51 +0.1 697,371 + SMa1273 0.51 +0.3 697,371 + SMa1273 0.51 -0.1 697,371 + SMa1273 0.51 +0.0 697,372 - SMa1273 0.51 -0.5 697,372 - SMa1273 0.51 +1.1 697,372 - SMa1273 0.51 +0.3 697,372 - SMa1273 0.51 +0.6 697,485 + SMa1273 0.59 +1.1 697,486 - SMa1273 0.59 -1.3 697,486 - SMa1273 0.59 -0.0 697,494 + SMa1273 0.60 +0.2 697,494 + SMa1273 0.60 +0.3 697,495 - SMa1273 0.60 +0.0 697,527 + SMa1273 0.62 +0.2 697,527 + SMa1273 0.62 -0.5 697,611 - SMa1273 0.69 +1.5 697,789 - SMa1273 0.82 +0.4 697,789 - SMa1273 0.82 -0.2 697,821 + SMa1273 0.84 +0.0 697,821 + SMa1273 0.84 +0.6 697,824 + SMa1273 0.84 +0.6 697,824 + SMa1273 0.84 +0.3 697,824 + SMa1273 0.84 +0.4 697,824 + SMa1273 0.84 +0.5 697,825 - SMa1273 0.85 +0.7 697,825 - SMa1273 0.85 +1.4 697,932 + -0.0 697,932 + -0.6 697,933 - +0.6 697,998 + -0.3 698,290 - SMa1276 0.51 +0.4 698,311 + SMa1276 0.56 -1.1 698,406 + SMa1276 0.77 +0.0 698,407 - SMa1276 0.77 +0.4 698,407 - SMa1276 0.77 -0.0 698,409 + SMa1276 0.78 +1.3 698,409 + SMa1276 0.78 +1.1 698,616 + -0.1 698,617 - +0.3 698,617 - -1.1 698,921 + +0.0 698,978 + -0.4 698,979 - -0.4 698,979 - +0.6 699,082 + SMa1279 0.20 -0.5 699,082 + SMa1279 0.20 -2.1 699,082 + SMa1279 0.20 +0.4 699,135 - SMa1279 0.29 -3.7 699,197 + SMa1279 0.40 -0.3 699,417 + SMa1279 0.79 +0.1
Or see this region's nucleotide sequence