Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1087 and SMa1089 overlap by 4 nucleotides SMa1089 and SMa1091 overlap by 4 nucleotides SMa1091 and SMa1092 are separated by 223 nucleotides SMa1092 and SMa1093 are separated by 253 nucleotides SMa1093 and SMa1095 are separated by 187 nucleotides
SMa1087: SMa1087 - cation transport P-type ATPase, at 594,396 to 596,597
SMa1087
SMa1089: SMa1089 - hypothetical protein, at 596,594 to 596,797
SMa1089
SMa1091: SMa1091 - hypothetical protein, at 596,794 to 597,297
SMa1091
SMa1092: SMa1092 - hypothetical protein, at 597,521 to 598,030
SMa1092
SMa1093: SMa1093 - hypothetical protein, at 598,284 to 598,616
SMa1093
SMa1095: SMa1095 - hypothetical protein, at 598,804 to 599,112
SMa1095
Position (kb) 597
598
599 Strain fitness (log2 ratio) -1
0
1
2 at 596.594 kb on - strand at 596.594 kb on - strand at 596.789 kb on - strand at 596.801 kb on - strand at 596.861 kb on - strand, within SMa1091 at 596.935 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.997 kb on - strand, within SMa1091 at 596.997 kb on - strand, within SMa1091 at 597.059 kb on + strand, within SMa1091 at 597.169 kb on + strand, within SMa1091 at 597.227 kb on - strand, within SMa1091 at 597.295 kb on + strand at 597.295 kb on + strand at 597.421 kb on + strand at 597.422 kb on - strand at 597.422 kb on - strand at 597.445 kb on - strand at 597.522 kb on + strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.577 kb on + strand, within SMa1092 at 597.654 kb on + strand, within SMa1092 at 597.954 kb on - strand at 597.989 kb on - strand at 597.989 kb on - strand at 597.989 kb on - strand at 598.064 kb on + strand at 598.065 kb on - strand at 598.065 kb on - strand at 598.126 kb on - strand at 598.270 kb on + strand at 598.270 kb on + strand at 598.271 kb on - strand at 598.271 kb on - strand at 598.361 kb on + strand, within SMa1093 at 598.382 kb on - strand, within SMa1093 at 598.551 kb on + strand, within SMa1093 at 598.576 kb on - strand, within SMa1093 at 598.576 kb on - strand, within SMa1093 at 598.598 kb on + strand at 598.748 kb on + strand at 598.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 596,594 - -0.2 596,594 - +0.0 596,789 - +0.4 596,801 - +0.2 596,861 - SMa1091 0.13 +0.2 596,935 + SMa1091 0.28 -0.4 596,996 + SMa1091 0.40 +0.3 596,996 + SMa1091 0.40 +2.2 596,996 + SMa1091 0.40 +0.9 596,996 + SMa1091 0.40 +0.7 596,997 - SMa1091 0.40 +0.4 596,997 - SMa1091 0.40 -1.0 597,059 + SMa1091 0.53 +0.9 597,169 + SMa1091 0.74 +0.2 597,227 - SMa1091 0.86 -0.5 597,295 + +1.7 597,295 + -0.3 597,421 + -0.7 597,422 - +0.3 597,422 - -0.3 597,445 - +0.8 597,522 + -0.5 597,523 - +0.1 597,523 - +1.8 597,523 - +0.8 597,523 - +0.4 597,577 + SMa1092 0.11 +1.0 597,654 + SMa1092 0.26 +0.0 597,954 - +1.6 597,989 - -0.2 597,989 - -0.7 597,989 - +0.3 598,064 + +0.1 598,065 - -0.8 598,065 - -0.2 598,126 - -1.2 598,270 + -0.1 598,270 + +0.2 598,271 - +0.2 598,271 - +0.2 598,361 + SMa1093 0.23 -0.1 598,382 - SMa1093 0.29 -0.2 598,551 + SMa1093 0.80 -0.3 598,576 - SMa1093 0.88 +1.1 598,576 - SMa1093 0.88 +0.8 598,598 + -0.6 598,748 + -1.0 598,834 - -0.5
Or see this region's nucleotide sequence