Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0636 and SMa0637 are separated by 439 nucleotides SMa0637 and SMa0638 overlap by 4 nucleotides SMa0638 and SMa0639 are separated by 404 nucleotides SMa0639 and SMa0640 are separated by 90 nucleotides
SMa0636: SMa0636 - hypothetical protein, at 341,499 to 342,152
SMa0636
SMa0637: SMa0637 - hypothetical protein, at 342,592 to 342,981
SMa0637
SMa0638: SMa0638 - hypothetical protein, at 342,978 to 343,235
SMa0638
SMa0639: SMa0639 - hypothetical protein, at 343,640 to 344,044
SMa0639
SMa0640: SMa0640 - hypothetical protein, at 344,135 to 344,554
SMa0640
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1 at 342.142 kb on - strand at 342.254 kb on + strand at 342.269 kb on + strand at 342.271 kb on + strand at 342.272 kb on - strand at 342.309 kb on + strand at 342.310 kb on - strand at 342.402 kb on - strand at 342.446 kb on + strand at 342.446 kb on + strand at 342.447 kb on - strand at 342.447 kb on - strand at 342.508 kb on + strand at 342.556 kb on + strand at 342.556 kb on + strand at 342.628 kb on + strand at 342.726 kb on - strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.873 kb on + strand, within SMa0637 at 342.874 kb on - strand, within SMa0637 at 342.932 kb on + strand, within SMa0637 at 343.036 kb on - strand, within SMa0638 at 343.180 kb on - strand, within SMa0638 at 343.363 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.519 kb on + strand at 343.519 kb on + strand at 343.571 kb on + strand at 343.579 kb on - strand at 343.583 kb on - strand at 343.596 kb on - strand at 343.683 kb on + strand, within SMa0639 at 343.683 kb on + strand, within SMa0639 at 343.684 kb on - strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand at 343.688 kb on - strand, within SMa0639 at 343.716 kb on + strand, within SMa0639 at 343.756 kb on + strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.811 kb on + strand, within SMa0639 at 343.852 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639 at 344.036 kb on + strand at 344.036 kb on + strand at 344.036 kb on + strand at 344.037 kb on - strand at 344.037 kb on - strand at 344.180 kb on - strand, within SMa0640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 342,142 - -0.1 342,254 + +0.2 342,269 + +0.1 342,271 + +0.5 342,272 - -0.1 342,309 + +0.7 342,310 - -0.1 342,402 - +0.0 342,446 + -0.1 342,446 + +0.6 342,447 - -1.7 342,447 - -0.2 342,508 + -0.3 342,556 + -0.1 342,556 + +0.9 342,628 + +0.1 342,726 - SMa0637 0.34 -0.1 342,727 + SMa0637 0.35 -0.4 342,727 + SMa0637 0.35 -0.2 342,727 + SMa0637 0.35 +0.4 342,727 + SMa0637 0.35 +0.4 342,727 + SMa0637 0.35 +0.5 342,727 + SMa0637 0.35 +0.2 342,728 - SMa0637 0.35 -0.2 342,728 - SMa0637 0.35 +0.4 342,728 - SMa0637 0.35 -0.2 342,873 + SMa0637 0.72 +0.5 342,874 - SMa0637 0.72 +0.1 342,932 + SMa0637 0.87 +0.6 343,036 - SMa0638 0.22 +0.1 343,180 - SMa0638 0.78 +0.9 343,363 - +0.4 343,446 + +0.5 343,446 + +0.7 343,447 - -0.4 343,447 - -0.1 343,519 + +1.0 343,519 + +0.8 343,571 + +0.7 343,579 - -0.2 343,583 - -0.1 343,596 - +0.1 343,683 + SMa0639 0.11 -0.1 343,683 + SMa0639 0.11 -0.2 343,684 - SMa0639 0.11 -2.1 343,687 + SMa0639 0.12 -0.2 343,687 + SMa0639 0.12 -0.1 343,688 - SMa0639 0.12 -0.4 343,688 - SMa0639 0.12 +0.0 343,688 - SMa0639 0.12 +0.4 343,688 - +1.5 343,688 - SMa0639 0.12 +1.5 343,716 + SMa0639 0.19 -0.9 343,756 + SMa0639 0.29 +0.0 343,757 - SMa0639 0.29 -0.1 343,757 - SMa0639 0.29 -0.2 343,757 - SMa0639 0.29 -0.1 343,811 + SMa0639 0.42 +0.2 343,852 - SMa0639 0.52 +1.5 343,965 - SMa0639 0.80 +0.3 343,965 - SMa0639 0.80 +0.4 344,036 + +0.3 344,036 + -0.0 344,036 + +0.2 344,037 - +0.3 344,037 - +0.2 344,180 - SMa0640 0.11 +0.1
Or see this region's nucleotide sequence