Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0620 and SMa0621 are separated by 2 nucleotides SMa0621 and SMa0622 overlap by 4 nucleotides SMa0622 and SMa0625 are separated by 431 nucleotides
SMa0620: SMa0620 - hypothetical protein, at 330,668 to 331,474
SMa0620
SMa0621: SMa0621 - FixI2 E1-E2 type cation ATPase, at 331,477 to 333,744
SMa0621
SMa0622: SMa0622 - FixS2 nitrogen fixation protein, at 333,741 to 334,001
SMa0622
SMa0625: SMa0625 - hypothetical protein, at 334,433 to 334,594
SMa0625
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.546 kb on - strand at 330.546 kb on - strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.668 kb on - strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.810 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.960 kb on - strand, within SMa0620 at 331.109 kb on + strand, within SMa0620 at 331.110 kb on - strand, within SMa0620 at 331.153 kb on + strand, within SMa0620 at 331.371 kb on + strand, within SMa0620 at 331.457 kb on + strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.774 kb on + strand, within SMa0621 at 331.972 kb on + strand, within SMa0621 at 331.991 kb on - strand, within SMa0621 at 332.084 kb on - strand, within SMa0621 at 332.581 kb on + strand, within SMa0621 at 332.582 kb on - strand, within SMa0621 at 332.678 kb on + strand, within SMa0621 at 332.678 kb on + strand, within SMa0621 at 332.687 kb on + strand, within SMa0621 at 332.732 kb on + strand, within SMa0621 at 332.733 kb on - strand, within SMa0621 at 332.733 kb on - strand, within SMa0621 at 332.741 kb on + strand, within SMa0621 at 332.817 kb on - strand, within SMa0621 at 332.847 kb on - strand, within SMa0621 at 332.880 kb on - strand, within SMa0621 at 333.247 kb on - strand, within SMa0621 at 333.247 kb on - strand, within SMa0621 at 333.568 kb on + strand at 333.569 kb on - strand at 333.569 kb on - strand at 333.569 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.980 kb on - strand at 333.980 kb on - strand at 334.346 kb on - strand at 334.351 kb on + strand at 334.400 kb on + strand at 334.400 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.666 kb on + strand at 334.667 kb on - strand at 334.707 kb on + strand at 334.708 kb on - strand at 334.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 330,546 - -0.3 330,546 - +0.3 330,667 + +1.0 330,667 + -0.0 330,667 + -0.1 330,668 - +0.1 330,717 + +1.3 330,717 + +0.3 330,717 + +0.2 330,810 - SMa0620 0.18 +0.2 330,831 - SMa0620 0.20 +0.4 330,831 - SMa0620 0.20 +0.8 330,925 + SMa0620 0.32 -0.4 330,925 + SMa0620 0.32 -0.7 330,960 - SMa0620 0.36 +1.0 331,109 + SMa0620 0.55 +1.5 331,110 - SMa0620 0.55 +0.5 331,153 + SMa0620 0.60 -0.2 331,371 + SMa0620 0.87 -0.7 331,457 + +2.5 331,495 - -0.4 331,495 - -0.5 331,495 - +0.3 331,774 + SMa0621 0.13 -0.2 331,972 + SMa0621 0.22 +0.6 331,991 - SMa0621 0.23 +0.1 332,084 - SMa0621 0.27 +0.5 332,581 + SMa0621 0.49 -2.5 332,582 - SMa0621 0.49 +2.5 332,678 + SMa0621 0.53 +1.3 332,678 + SMa0621 0.53 +0.0 332,687 + SMa0621 0.53 +0.8 332,732 + SMa0621 0.55 +0.4 332,733 - SMa0621 0.55 -2.3 332,733 - SMa0621 0.55 +0.5 332,741 + SMa0621 0.56 -0.3 332,817 - SMa0621 0.59 +0.2 332,847 - SMa0621 0.60 -1.2 332,880 - SMa0621 0.62 +1.2 333,247 - SMa0621 0.78 +1.1 333,247 - SMa0621 0.78 +0.2 333,568 + -2.0 333,569 - +0.4 333,569 - +0.1 333,569 - -0.1 333,748 - +0.7 333,748 - +1.5 333,748 - -0.0 333,748 - -1.1 333,748 - -0.2 333,748 - -1.4 333,980 - +0.9 333,980 - +0.8 334,346 - -0.3 334,351 + -1.5 334,400 + +0.1 334,400 + -1.4 334,642 + -0.3 334,642 + +0.3 334,642 + -0.1 334,666 + +0.3 334,667 - -0.5 334,707 + -0.1 334,708 - +0.5 334,737 + +1.1
Or see this region's nucleotide sequence