Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21463

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21461 and SM_b21462 are separated by 35 nucleotidesSM_b21462 and SM_b21463 overlap by 10 nucleotidesSM_b21463 and SM_b21464 are separated by 213 nucleotides SM_b21461: SM_b21461 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,387,351 to 1,388,613 _b21461 SM_b21462: SM_b21462 - sugar kinase, at 1,388,649 to 1,389,584 _b21462 SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960 _b21463 SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947 _b21464 Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -2 -1 0 1 2at 1388.604 kb on + strandat 1388.604 kb on + strandat 1388.604 kb on + strandat 1388.605 kb on - strandat 1388.605 kb on - strandat 1388.605 kb on - strandat 1388.605 kb on - strandat 1388.651 kb on - strandat 1388.651 kb on - strandat 1388.651 kb on - strandat 1388.653 kb on - strandat 1388.653 kb on - strandat 1388.675 kb on - strandat 1388.717 kb on - strandat 1388.835 kb on - strand, within SM_b21462at 1388.916 kb on - strand, within SM_b21462at 1389.090 kb on + strand, within SM_b21462at 1389.091 kb on - strand, within SM_b21462at 1389.091 kb on - strand, within SM_b21462at 1389.168 kb on + strand, within SM_b21462at 1389.169 kb on - strand, within SM_b21462at 1389.229 kb on + strand, within SM_b21462at 1389.363 kb on - strand, within SM_b21462at 1389.523 kb on + strandat 1389.526 kb on + strandat 1389.527 kb on - strandat 1389.527 kb on - strandat 1389.615 kb on + strandat 1389.616 kb on - strandat 1389.892 kb on - strand, within SM_b21463at 1389.892 kb on - strand, within SM_b21463at 1389.945 kb on + strand, within SM_b21463at 1389.946 kb on - strand, within SM_b21463at 1390.035 kb on + strand, within SM_b21463at 1390.036 kb on - strand, within SM_b21463at 1390.042 kb on + strand, within SM_b21463at 1390.044 kb on + strand, within SM_b21463at 1390.044 kb on + strand, within SM_b21463at 1390.044 kb on + strand, within SM_b21463at 1390.044 kb on + strand, within SM_b21463at 1390.044 kb on + strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.045 kb on - strand, within SM_b21463at 1390.078 kb on + strand, within SM_b21463at 1390.078 kb on + strand, within SM_b21463at 1390.215 kb on + strand, within SM_b21463at 1390.218 kb on + strand, within SM_b21463at 1390.218 kb on + strand, within SM_b21463at 1390.219 kb on - strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.222 kb on - strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.225 kb on - strand, within SM_b21463at 1390.225 kb on - strand, within SM_b21463at 1390.227 kb on + strand, within SM_b21463at 1390.228 kb on - strand, within SM_b21463at 1390.228 kb on - strand, within SM_b21463at 1390.234 kb on - strand, within SM_b21463at 1390.234 kb on - strand, within SM_b21463at 1390.366 kb on + strand, within SM_b21463at 1390.367 kb on - strand, within SM_b21463at 1390.389 kb on + strand, within SM_b21463at 1390.390 kb on - strand, within SM_b21463at 1390.489 kb on - strand, within SM_b21463at 1390.584 kb on + strand, within SM_b21463at 1390.690 kb on + strand, within SM_b21463at 1390.691 kb on - strand, within SM_b21463at 1390.732 kb on - strand, within SM_b21463at 1390.817 kb on + strand, within SM_b21463at 1390.817 kb on + strand, within SM_b21463at 1390.817 kb on + strand, within SM_b21463at 1390.818 kb on - strand, within SM_b21463at 1390.818 kb on - strand, within SM_b21463at 1390.819 kb on + strand, within SM_b21463at 1390.819 kb on + strand, within SM_b21463at 1390.965 kb on + strandat 1391.237 kb on + strandat 1391.299 kb on + strand, within SM_b21464at 1391.300 kb on - strand, within SM_b21464at 1391.333 kb on + strand, within SM_b21464at 1391.420 kb on + strand, within SM_b21464at 1391.421 kb on - strand, within SM_b21464at 1391.421 kb on - strand, within SM_b21464at 1391.470 kb on + strand, within SM_b21464at 1391.622 kb on + strand, within SM_b21464at 1391.712 kb on - strand, within SM_b21464at 1391.733 kb on - strand, within SM_b21464at 1391.778 kb on + strand, within SM_b21464at 1391.779 kb on - strand, within SM_b21464at 1391.945 kb on + strandat 1391.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,388,604 + +0.2
1,388,604 + +0.5
1,388,604 + -0.6
1,388,605 - -0.6
1,388,605 - -0.1
1,388,605 - -1.3
1,388,605 - -0.1
1,388,651 - +0.2
1,388,651 - +0.6
1,388,651 - -1.3
1,388,653 - -0.8
1,388,653 - -0.4
1,388,675 - -1.0
1,388,717 - -1.7
1,388,835 - SM_b21462 0.20 +0.3
1,388,916 - SM_b21462 0.29 -0.2
1,389,090 + SM_b21462 0.47 -0.5
1,389,091 - SM_b21462 0.47 +0.9
1,389,091 - SM_b21462 0.47 -0.5
1,389,168 + SM_b21462 0.55 +0.5
1,389,169 - SM_b21462 0.56 -0.4
1,389,229 + SM_b21462 0.62 -0.0
1,389,363 - SM_b21462 0.76 -0.5
1,389,523 + +2.0
1,389,526 + +0.1
1,389,527 - -1.1
1,389,527 - -0.1
1,389,615 + +1.1
1,389,616 - -0.8
1,389,892 - SM_b21463 0.23 +0.8
1,389,892 - SM_b21463 0.23 +1.1
1,389,945 + SM_b21463 0.27 +0.1
1,389,946 - SM_b21463 0.27 +0.4
1,390,035 + SM_b21463 0.33 +0.6
1,390,036 - SM_b21463 0.33 +1.1
1,390,042 + SM_b21463 0.34 -0.5
1,390,044 + SM_b21463 0.34 +0.3
1,390,044 + SM_b21463 0.34 -0.1
1,390,044 + SM_b21463 0.34 -2.4
1,390,044 + SM_b21463 0.34 +0.4
1,390,044 + SM_b21463 0.34 -0.1
1,390,045 - SM_b21463 0.34 -1.0
1,390,045 - SM_b21463 0.34 +0.1
1,390,045 - SM_b21463 0.34 -0.5
1,390,045 - SM_b21463 0.34 +1.4
1,390,045 - SM_b21463 0.34 +0.2
1,390,045 - SM_b21463 0.34 +0.4
1,390,045 - SM_b21463 0.34 -0.2
1,390,045 - SM_b21463 0.34 +0.7
1,390,045 - SM_b21463 0.34 +0.2
1,390,045 - SM_b21463 0.34 +0.2
1,390,045 - SM_b21463 0.34 -0.7
1,390,045 - SM_b21463 0.34 -0.2
1,390,078 + SM_b21463 0.36 -0.1
1,390,078 + SM_b21463 0.36 +0.4
1,390,215 + SM_b21463 0.46 +0.5
1,390,218 + SM_b21463 0.46 -1.8
1,390,218 + SM_b21463 0.46 -1.2
1,390,219 - SM_b21463 0.46 +0.1
1,390,221 + SM_b21463 0.47 +0.6
1,390,221 + SM_b21463 0.47 -2.5
1,390,221 + SM_b21463 0.47 -0.3
1,390,221 + SM_b21463 0.47 +0.3
1,390,222 - SM_b21463 0.47 -0.3
1,390,224 + SM_b21463 0.47 -0.1
1,390,224 + SM_b21463 0.47 -0.2
1,390,224 + SM_b21463 0.47 -0.1
1,390,224 + SM_b21463 0.47 +0.1
1,390,225 - SM_b21463 0.47 -0.5
1,390,225 - SM_b21463 0.47 +0.3
1,390,227 + SM_b21463 0.47 -0.2
1,390,228 - SM_b21463 0.47 -0.0
1,390,228 - SM_b21463 0.47 +0.4
1,390,234 - SM_b21463 0.48 -0.4
1,390,234 - SM_b21463 0.48 -0.7
1,390,366 + SM_b21463 0.57 -0.6
1,390,367 - SM_b21463 0.57 +0.5
1,390,389 + SM_b21463 0.59 -0.6
1,390,390 - SM_b21463 0.59 -0.9
1,390,489 - SM_b21463 0.66 +0.5
1,390,584 + SM_b21463 0.73 -0.4
1,390,690 + SM_b21463 0.80 +0.4
1,390,691 - SM_b21463 0.81 +0.1
1,390,732 - SM_b21463 0.83 -0.1
1,390,817 + SM_b21463 0.90 -0.3
1,390,817 + SM_b21463 0.90 -0.2
1,390,817 + SM_b21463 0.90 +0.4
1,390,818 - SM_b21463 0.90 +0.7
1,390,818 - SM_b21463 0.90 -0.0
1,390,819 + SM_b21463 0.90 +1.9
1,390,819 + SM_b21463 0.90 +1.5
1,390,965 + +0.1
1,391,237 + -1.5
1,391,299 + SM_b21464 0.16 +1.1
1,391,300 - SM_b21464 0.16 -0.8
1,391,333 + SM_b21464 0.21 -1.8
1,391,420 + SM_b21464 0.32 -0.7
1,391,421 - SM_b21464 0.32 -0.5
1,391,421 - SM_b21464 0.32 -0.0
1,391,470 + SM_b21464 0.38 -0.9
1,391,622 + SM_b21464 0.58 -1.1
1,391,712 - SM_b21464 0.70 -0.2
1,391,733 - SM_b21464 0.72 +1.4
1,391,778 + SM_b21464 0.78 -1.5
1,391,779 - SM_b21464 0.78 -0.0
1,391,945 + +0.2
1,391,945 + +0.3

Or see this region's nucleotide sequence