Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21277 and SM_b21278 overlap by 4 nucleotides SM_b21278 and SM_b21279 are separated by 6 nucleotides
SM_b21277: SM_b21277 - inosine-uridine preferring nucleoside hydrolase, at 850,786 to 851,709
_b21277
SM_b21278: SM_b21278 - adenine deaminase, at 851,706 to 853,487
_b21278
SM_b21279: SM_b21279 - amidohydrolase, at 853,494 to 854,663
_b21279
Position (kb) 851
852
853
854 Strain fitness (log2 ratio) -1
0
1
2 at 851.013 kb on + strand, within SM_b21277 at 851.014 kb on - strand, within SM_b21277 at 851.014 kb on - strand, within SM_b21277 at 851.158 kb on - strand, within SM_b21277 at 851.253 kb on + strand, within SM_b21277 at 851.253 kb on + strand, within SM_b21277 at 851.444 kb on - strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.635 kb on + strand at 851.636 kb on - strand at 851.636 kb on - strand at 851.649 kb on - strand at 851.713 kb on + strand at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.973 kb on - strand at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 852.010 kb on - strand, within SM_b21278 at 852.010 kb on - strand, within SM_b21278 at 852.521 kb on + strand, within SM_b21278 at 852.557 kb on + strand, within SM_b21278 at 852.983 kb on + strand, within SM_b21278 at 852.984 kb on - strand, within SM_b21278 at 853.014 kb on - strand, within SM_b21278 at 853.014 kb on - strand, within SM_b21278 at 853.247 kb on - strand, within SM_b21278 at 853.360 kb on - strand at 853.441 kb on + strand at 853.442 kb on - strand at 853.570 kb on + strand at 853.581 kb on - strand at 853.627 kb on + strand, within SM_b21279 at 853.627 kb on + strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.776 kb on - strand, within SM_b21279 at 853.792 kb on + strand, within SM_b21279 at 853.810 kb on + strand, within SM_b21279 at 853.810 kb on + strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.878 kb on - strand, within SM_b21279 at 853.880 kb on - strand, within SM_b21279 at 854.189 kb on - strand, within SM_b21279 at 854.345 kb on + strand, within SM_b21279
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 851,013 + SM_b21277 0.25 -0.2 851,014 - SM_b21277 0.25 -0.6 851,014 - SM_b21277 0.25 -0.3 851,158 - SM_b21277 0.40 -0.4 851,253 + SM_b21277 0.51 +0.3 851,253 + SM_b21277 0.51 -1.1 851,444 - SM_b21277 0.71 +0.7 851,488 + SM_b21277 0.76 +0.8 851,488 + SM_b21277 0.76 -1.6 851,488 + SM_b21277 0.76 -0.2 851,489 - SM_b21277 0.76 -0.4 851,489 - SM_b21277 0.76 +0.4 851,489 - SM_b21277 0.76 -0.0 851,635 + -0.5 851,636 - +0.5 851,636 - -0.1 851,649 - -0.5 851,713 + +0.3 851,972 + SM_b21278 0.15 +0.0 851,972 + SM_b21278 0.15 -1.4 851,972 + SM_b21278 0.15 -0.3 851,972 + SM_b21278 0.15 +0.3 851,972 + SM_b21278 0.15 -0.6 851,972 + SM_b21278 0.15 +0.8 851,972 + SM_b21278 0.15 -0.3 851,972 + SM_b21278 0.15 -0.2 851,972 + SM_b21278 0.15 +0.3 851,973 - -0.1 851,973 - SM_b21278 0.15 +2.1 851,973 - SM_b21278 0.15 -0.1 851,973 - SM_b21278 0.15 +0.3 851,973 - SM_b21278 0.15 +0.5 851,973 - SM_b21278 0.15 +1.1 852,010 - SM_b21278 0.17 +1.8 852,010 - SM_b21278 0.17 +1.6 852,521 + SM_b21278 0.46 +0.3 852,557 + SM_b21278 0.48 +0.7 852,983 + SM_b21278 0.72 +0.1 852,984 - SM_b21278 0.72 -0.1 853,014 - SM_b21278 0.73 +0.2 853,014 - SM_b21278 0.73 +0.1 853,247 - SM_b21278 0.86 -0.1 853,360 - -0.2 853,441 + -0.3 853,442 - -0.3 853,570 + -1.1 853,581 - +0.8 853,627 + SM_b21279 0.11 -0.5 853,627 + SM_b21279 0.11 -0.1 853,628 - SM_b21279 0.11 -0.6 853,628 - SM_b21279 0.11 -1.5 853,628 - SM_b21279 0.11 +0.5 853,775 + SM_b21279 0.24 +0.8 853,775 + SM_b21279 0.24 +0.3 853,775 + SM_b21279 0.24 -0.3 853,776 - SM_b21279 0.24 -1.3 853,792 + SM_b21279 0.25 +0.4 853,810 + SM_b21279 0.27 +0.5 853,810 + SM_b21279 0.27 +1.0 853,811 - SM_b21279 0.27 +0.3 853,811 - SM_b21279 0.27 +0.3 853,811 - SM_b21279 0.27 +1.0 853,811 - SM_b21279 0.27 +0.2 853,878 - SM_b21279 0.33 +0.5 853,880 - SM_b21279 0.33 -0.6 854,189 - SM_b21279 0.59 +0.3 854,345 + SM_b21279 0.73 +0.3
Or see this region's nucleotide sequence