Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21207 and SM_b21208 overlap by 4 nucleotides SM_b21208 and SM_b21209 are separated by 95 nucleotides SM_b21209 and SM_b21210 overlap by 4 nucleotides SM_b21210 and SM_b21211 are separated by 208 nucleotides
SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972
_b21207
SM_b21208: SM_b21208 - TetR family transcriptional regulator, at 960,969 to 961,691
_b21208
SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139
_b21209
SM_b21210: SM_b21210 - two-component response regulator protein, at 963,136 to 963,807
_b21210
SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782
_b21211
Position (kb) 961
962
963
964 Strain fitness (log2 ratio) -2
-1
0
1 at 961.078 kb on + strand, within SM_b21208 at 961.079 kb on - strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.224 kb on - strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.229 kb on - strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.681 kb on + strand at 961.811 kb on - strand at 961.927 kb on - strand, within SM_b21209 at 962.018 kb on + strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.124 kb on - strand, within SM_b21209 at 962.269 kb on + strand, within SM_b21209 at 962.650 kb on - strand, within SM_b21209 at 962.654 kb on - strand, within SM_b21209 at 962.655 kb on + strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.877 kb on + strand, within SM_b21209 at 962.877 kb on + strand, within SM_b21209 at 962.878 kb on - strand, within SM_b21209 at 962.878 kb on - strand, within SM_b21209 at 962.908 kb on - strand, within SM_b21209 at 963.033 kb on + strand at 963.034 kb on - strand at 963.034 kb on - strand at 963.384 kb on + strand, within SM_b21210 at 963.384 kb on + strand, within SM_b21210 at 963.407 kb on + strand, within SM_b21210 at 963.408 kb on - strand, within SM_b21210 at 963.439 kb on + strand, within SM_b21210 at 963.440 kb on - strand, within SM_b21210 at 963.441 kb on + strand, within SM_b21210 at 963.441 kb on + strand, within SM_b21210 at 963.442 kb on - strand, within SM_b21210 at 963.484 kb on - strand, within SM_b21210 at 963.547 kb on - strand, within SM_b21210 at 963.852 kb on + strand at 963.853 kb on - strand at 963.912 kb on + strand at 964.090 kb on + strand at 964.090 kb on + strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.093 kb on - strand at 964.093 kb on - strand at 964.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 961,078 + SM_b21208 0.15 -0.4 961,079 - SM_b21208 0.15 -0.4 961,223 + SM_b21208 0.35 -0.8 961,223 + SM_b21208 0.35 +0.2 961,224 - SM_b21208 0.35 +0.1 961,228 + SM_b21208 0.36 +0.6 961,228 + SM_b21208 0.36 -0.2 961,229 - SM_b21208 0.36 -0.0 961,477 + SM_b21208 0.70 -1.0 961,477 + SM_b21208 0.70 -0.6 961,477 + SM_b21208 0.70 -0.0 961,478 - SM_b21208 0.70 +0.7 961,478 - SM_b21208 0.70 +1.7 961,478 - SM_b21208 0.70 +0.2 961,478 - SM_b21208 0.70 +0.8 961,478 - SM_b21208 0.70 -0.5 961,681 + +1.0 961,811 - -0.5 961,927 - SM_b21209 0.10 -1.9 962,018 + SM_b21209 0.17 -1.2 962,019 - SM_b21209 0.17 -0.3 962,019 - SM_b21209 0.17 -0.5 962,019 - SM_b21209 0.17 -0.7 962,038 + SM_b21209 0.19 -0.5 962,038 + SM_b21209 0.19 -1.1 962,124 - SM_b21209 0.25 -1.8 962,269 + SM_b21209 0.36 -0.5 962,650 - SM_b21209 0.64 -0.3 962,654 - SM_b21209 0.64 -1.9 962,655 + SM_b21209 0.64 -0.5 962,656 - SM_b21209 0.64 -0.1 962,656 - SM_b21209 0.64 -0.6 962,656 - SM_b21209 0.64 -0.8 962,656 - SM_b21209 0.64 +0.2 962,656 - SM_b21209 0.64 -0.3 962,656 - SM_b21209 0.64 -1.0 962,877 + SM_b21209 0.81 +0.2 962,877 + SM_b21209 0.81 +0.5 962,878 - SM_b21209 0.81 -1.2 962,878 - SM_b21209 0.81 -0.3 962,908 - SM_b21209 0.83 -0.7 963,033 + +0.8 963,034 - -0.9 963,034 - -0.6 963,384 + SM_b21210 0.37 -1.5 963,384 + SM_b21210 0.37 +0.6 963,407 + SM_b21210 0.40 +1.5 963,408 - SM_b21210 0.40 -0.0 963,439 + SM_b21210 0.45 -1.0 963,440 - SM_b21210 0.45 +0.3 963,441 + SM_b21210 0.45 -0.1 963,441 + SM_b21210 0.45 +0.6 963,442 - SM_b21210 0.46 -0.1 963,484 - SM_b21210 0.52 -0.1 963,547 - SM_b21210 0.61 -0.6 963,852 + +1.3 963,853 - -0.1 963,912 + -1.2 964,090 + -0.2 964,090 + -2.4 964,091 - +0.3 964,091 - -1.1 964,092 + -0.9 964,092 + -0.3 964,092 + -0.9 964,092 + -0.9 964,092 + -0.7 964,092 + -0.9 964,093 - -0.6 964,093 - -0.6 964,093 - -0.3
Or see this region's nucleotide sequence