Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21015 and SM_b21016 are separated by 64 nucleotides SM_b21016 and SM_b21017 are separated by 2 nucleotides
SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299
_b21015
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.412 kb on + strand, within SM_b21015 at 638.412 kb on + strand, within SM_b21015 at 638.501 kb on - strand, within SM_b21015 at 638.674 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.756 kb on - strand, within SM_b21015 at 638.800 kb on + strand, within SM_b21015 at 638.801 kb on - strand, within SM_b21015 at 638.809 kb on + strand, within SM_b21015 at 638.810 kb on - strand, within SM_b21015 at 638.810 kb on - strand, within SM_b21015 at 638.827 kb on + strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.905 kb on + strand, within SM_b21015 at 638.906 kb on - strand, within SM_b21015 at 638.916 kb on + strand, within SM_b21015 at 638.916 kb on + strand, within SM_b21015 at 638.917 kb on - strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.989 kb on - strand, within SM_b21015 at 638.989 kb on - strand, within SM_b21015 at 639.138 kb on + strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.208 kb on + strand at 639.208 kb on + strand at 639.208 kb on + strand at 639.209 kb on - strand at 639.209 kb on - strand at 639.259 kb on - strand at 639.446 kb on + strand at 639.452 kb on + strand at 639.452 kb on + strand at 639.453 kb on - strand at 639.460 kb on + strand at 639.461 kb on - strand at 639.461 kb on - strand at 639.624 kb on + strand, within SM_b21016 at 639.624 kb on + strand, within SM_b21016 at 639.625 kb on - strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.772 kb on - strand, within SM_b21016 at 639.803 kb on + strand, within SM_b21016 at 639.809 kb on + strand, within SM_b21016 at 639.810 kb on - strand, within SM_b21016 at 639.815 kb on + strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.137 kb on - strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.631 kb on - strand, within SM_b21017 at 640.714 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 641.070 kb on + strand, within SM_b21017 at 641.071 kb on - strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.196 kb on - strand, within SM_b21017 at 641.241 kb on + strand, within SM_b21017 at 641.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 638,412 + SM_b21015 0.29 -0.3 638,412 + SM_b21015 0.29 +1.8 638,501 - SM_b21015 0.36 +0.8 638,674 + SM_b21015 0.50 -0.0 638,727 + SM_b21015 0.54 +0.0 638,727 + SM_b21015 0.54 +0.3 638,727 + SM_b21015 0.54 +0.5 638,728 - SM_b21015 0.54 +0.6 638,728 - SM_b21015 0.54 +0.2 638,728 - SM_b21015 0.54 +0.2 638,756 - SM_b21015 0.57 -0.0 638,800 + SM_b21015 0.60 -0.0 638,801 - SM_b21015 0.60 +0.8 638,809 + SM_b21015 0.61 +0.6 638,810 - SM_b21015 0.61 -0.1 638,810 - SM_b21015 0.61 -0.5 638,827 + SM_b21015 0.62 -1.0 638,828 - SM_b21015 0.62 -0.1 638,828 - SM_b21015 0.62 +0.6 638,828 - SM_b21015 0.62 +0.8 638,828 - SM_b21015 0.62 -0.1 638,905 + SM_b21015 0.68 +0.5 638,906 - SM_b21015 0.69 +0.8 638,916 + SM_b21015 0.69 -0.8 638,916 + SM_b21015 0.69 +0.1 638,917 - SM_b21015 0.69 +0.0 638,988 + SM_b21015 0.75 -1.1 638,988 + SM_b21015 0.75 +0.7 638,988 + SM_b21015 0.75 -0.8 638,989 - SM_b21015 0.75 -0.2 638,989 - SM_b21015 0.75 -1.1 639,138 + SM_b21015 0.87 +1.9 639,139 - SM_b21015 0.87 -1.5 639,139 - SM_b21015 0.87 -0.5 639,139 - SM_b21015 0.87 +0.2 639,208 + +0.2 639,208 + -1.4 639,208 + -0.3 639,209 - -0.2 639,209 - -1.9 639,259 - +0.0 639,446 + +0.9 639,452 + +0.2 639,452 + -0.2 639,453 - -0.4 639,460 + +1.0 639,461 - -0.2 639,461 - +2.3 639,624 + SM_b21016 0.25 +1.3 639,624 + SM_b21016 0.25 -1.8 639,625 - SM_b21016 0.25 -0.9 639,758 + SM_b21016 0.38 -1.1 639,758 + SM_b21016 0.38 -0.5 639,759 - SM_b21016 0.38 -0.1 639,759 - SM_b21016 0.38 +0.1 639,772 - SM_b21016 0.40 -1.1 639,803 + SM_b21016 0.43 -0.7 639,809 + SM_b21016 0.43 -0.2 639,810 - SM_b21016 0.43 -0.1 639,815 + SM_b21016 0.44 -0.2 640,011 - SM_b21016 0.63 +0.2 640,011 - SM_b21016 0.63 -0.4 640,013 + SM_b21016 0.63 -0.2 640,013 + SM_b21016 0.63 -0.2 640,014 - SM_b21016 0.63 -0.0 640,014 - SM_b21016 0.63 -0.7 640,014 - SM_b21016 0.63 +0.0 640,136 + SM_b21016 0.75 +0.1 640,136 + SM_b21016 0.75 -0.1 640,137 - SM_b21016 0.75 +0.2 640,205 + SM_b21016 0.81 -0.3 640,205 + SM_b21016 0.81 -0.4 640,205 + SM_b21016 0.81 -0.2 640,206 - SM_b21016 0.82 -0.2 640,206 - SM_b21016 0.82 -0.2 640,206 - SM_b21016 0.82 +0.3 640,206 - SM_b21016 0.82 +0.6 640,630 + SM_b21017 0.23 +0.3 640,630 + SM_b21017 0.23 +0.2 640,630 + SM_b21017 0.23 -3.1 640,631 - SM_b21017 0.23 +0.8 640,714 + SM_b21017 0.31 +0.8 640,765 + SM_b21017 0.36 -0.6 640,765 + SM_b21017 0.36 +0.2 640,765 + SM_b21017 0.36 +1.1 640,766 - SM_b21017 0.36 -0.1 640,766 - SM_b21017 0.36 -0.4 641,070 + SM_b21017 0.66 +0.1 641,071 - SM_b21017 0.66 -1.0 641,164 + SM_b21017 0.76 +0.5 641,164 + SM_b21017 0.76 -1.2 641,165 - SM_b21017 0.76 +0.5 641,165 - SM_b21017 0.76 -0.1 641,196 - SM_b21017 0.79 +0.2 641,241 + SM_b21017 0.83 -0.8 641,312 + +0.1
Or see this region's nucleotide sequence