Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20631

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20630 and SM_b20631 are separated by 12 nucleotidesSM_b20631 and SM_b20632 are separated by 19 nucleotidesSM_b20632 and SM_b20633 overlap by 4 nucleotides SM_b20630: SM_b20630 - sugar uptake ABC transporter ATP-binding protein, at 1,648,919 to 1,650,004 _b20630 SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939 _b20631 SM_b20632: SM_b20632 - sugar uptake ABC transporter permease, at 1,651,959 to 1,652,822 _b20632 SM_b20633: SM_b20633 - sugar uptake ABC transporter permease, at 1,652,819 to 1,653,736 _b20633 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -2 -1 0 1at 1649.058 kb on + strand, within SM_b20630at 1649.058 kb on + strand, within SM_b20630at 1649.059 kb on - strand, within SM_b20630at 1649.059 kb on - strand, within SM_b20630at 1649.083 kb on - strand, within SM_b20630at 1649.154 kb on - strand, within SM_b20630at 1649.323 kb on - strand, within SM_b20630at 1649.421 kb on + strand, within SM_b20630at 1649.421 kb on + strand, within SM_b20630at 1649.719 kb on + strand, within SM_b20630at 1649.719 kb on + strand, within SM_b20630at 1649.736 kb on + strand, within SM_b20630at 1649.737 kb on - strand, within SM_b20630at 1649.950 kb on - strandat 1649.960 kb on + strandat 1649.961 kb on - strandat 1650.019 kb on - strandat 1650.019 kb on - strandat 1650.019 kb on - strandat 1650.078 kb on + strandat 1650.078 kb on + strandat 1650.130 kb on - strandat 1650.292 kb on - strand, within SM_b20631at 1650.292 kb on - strand, within SM_b20631at 1650.292 kb on - strand, within SM_b20631at 1650.355 kb on - strand, within SM_b20631at 1650.355 kb on - strand, within SM_b20631at 1650.467 kb on - strand, within SM_b20631at 1650.579 kb on + strand, within SM_b20631at 1650.580 kb on - strand, within SM_b20631at 1650.684 kb on + strand, within SM_b20631at 1650.684 kb on + strand, within SM_b20631at 1650.684 kb on + strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.685 kb on - strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.688 kb on + strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.689 kb on - strand, within SM_b20631at 1650.690 kb on + strand, within SM_b20631at 1650.690 kb on + strand, within SM_b20631at 1650.691 kb on - strand, within SM_b20631at 1650.691 kb on - strand, within SM_b20631at 1650.691 kb on - strand, within SM_b20631at 1650.721 kb on + strand, within SM_b20631at 1650.843 kb on + strand, within SM_b20631at 1650.844 kb on - strand, within SM_b20631at 1650.945 kb on + strand, within SM_b20631at 1650.946 kb on - strand, within SM_b20631at 1650.969 kb on + strand, within SM_b20631at 1650.969 kb on + strand, within SM_b20631at 1650.970 kb on - strand, within SM_b20631at 1650.972 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.089 kb on + strand, within SM_b20631at 1651.089 kb on + strand, within SM_b20631at 1651.120 kb on - strand, within SM_b20631at 1651.125 kb on + strand, within SM_b20631at 1651.125 kb on + strand, within SM_b20631at 1651.125 kb on + strand, within SM_b20631at 1651.126 kb on - strand, within SM_b20631at 1651.126 kb on - strand, within SM_b20631at 1651.126 kb on - strand, within SM_b20631at 1651.192 kb on - strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.198 kb on - strand, within SM_b20631at 1651.198 kb on - strand, within SM_b20631at 1651.198 kb on - strand, within SM_b20631at 1651.374 kb on + strand, within SM_b20631at 1651.420 kb on - strand, within SM_b20631at 1651.611 kb on + strand, within SM_b20631at 1651.612 kb on - strand, within SM_b20631at 1651.612 kb on - strand, within SM_b20631at 1651.675 kb on - strand, within SM_b20631at 1651.994 kb on - strandat 1651.994 kb on - strandat 1652.126 kb on - strand, within SM_b20632at 1652.359 kb on + strand, within SM_b20632at 1652.360 kb on - strand, within SM_b20632at 1652.360 kb on - strand, within SM_b20632

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,649,058 + SM_b20630 0.13 +0.2
1,649,058 + SM_b20630 0.13 +0.5
1,649,059 - SM_b20630 0.13 -0.3
1,649,059 - SM_b20630 0.13 +0.1
1,649,083 - SM_b20630 0.15 -0.5
1,649,154 - SM_b20630 0.22 -0.9
1,649,323 - SM_b20630 0.37 -0.2
1,649,421 + SM_b20630 0.46 +0.2
1,649,421 + SM_b20630 0.46 +0.1
1,649,719 + SM_b20630 0.74 -0.2
1,649,719 + SM_b20630 0.74 +0.8
1,649,736 + SM_b20630 0.75 -1.1
1,649,737 - SM_b20630 0.75 +0.2
1,649,950 - -0.4
1,649,960 + -0.1
1,649,961 - +0.1
1,650,019 - +1.0
1,650,019 - +0.0
1,650,019 - -0.2
1,650,078 + -0.5
1,650,078 + -1.0
1,650,130 - +0.2
1,650,292 - SM_b20631 0.14 -0.2
1,650,292 - SM_b20631 0.14 -0.1
1,650,292 - SM_b20631 0.14 +0.4
1,650,355 - SM_b20631 0.18 +0.3
1,650,355 - SM_b20631 0.18 -0.8
1,650,467 - SM_b20631 0.23 -0.1
1,650,579 + SM_b20631 0.29 -0.3
1,650,580 - SM_b20631 0.29 +0.1
1,650,684 + SM_b20631 0.35 -0.2
1,650,684 + SM_b20631 0.35 -1.0
1,650,684 + SM_b20631 0.35 +1.0
1,650,685 - SM_b20631 0.35 +0.1
1,650,685 - SM_b20631 0.35 +0.0
1,650,685 - SM_b20631 0.35 -0.7
1,650,685 - SM_b20631 0.35 -1.2
1,650,685 - SM_b20631 0.35 -1.6
1,650,685 - SM_b20631 0.35 -0.0
1,650,685 - SM_b20631 0.35 -1.9
1,650,685 - SM_b20631 0.35 -1.1
1,650,688 + SM_b20631 0.35 +0.2
1,650,688 + SM_b20631 0.35 +0.5
1,650,688 + SM_b20631 0.35 -1.1
1,650,688 + SM_b20631 0.35 -0.9
1,650,688 + SM_b20631 0.35 -0.4
1,650,689 - SM_b20631 0.35 +0.0
1,650,689 - SM_b20631 0.35 -0.5
1,650,689 - SM_b20631 0.35 +1.5
1,650,689 - SM_b20631 0.35 +0.7
1,650,689 - SM_b20631 0.35 -0.7
1,650,689 - SM_b20631 0.35 -0.1
1,650,689 - SM_b20631 0.35 -0.3
1,650,690 + SM_b20631 0.35 -0.1
1,650,690 + SM_b20631 0.35 -0.3
1,650,691 - SM_b20631 0.35 -1.4
1,650,691 - SM_b20631 0.35 -0.1
1,650,691 - SM_b20631 0.35 +0.1
1,650,721 + SM_b20631 0.37 -0.1
1,650,843 + SM_b20631 0.43 +0.0
1,650,844 - SM_b20631 0.43 -0.5
1,650,945 + SM_b20631 0.48 +0.5
1,650,946 - SM_b20631 0.48 -0.3
1,650,969 + SM_b20631 0.50 -0.8
1,650,969 + SM_b20631 0.50 -0.1
1,650,970 - SM_b20631 0.50 +1.5
1,650,972 + SM_b20631 0.50 +1.5
1,651,023 + SM_b20631 0.52 -0.2
1,651,023 + SM_b20631 0.52 +0.2
1,651,023 + SM_b20631 0.52 -0.4
1,651,023 + SM_b20631 0.52 -0.4
1,651,023 + SM_b20631 0.52 -0.0
1,651,023 + SM_b20631 0.52 -1.7
1,651,023 + SM_b20631 0.52 +0.0
1,651,024 - SM_b20631 0.52 -0.3
1,651,024 - SM_b20631 0.52 -0.3
1,651,024 - SM_b20631 0.52 -0.7
1,651,024 - SM_b20631 0.52 -0.4
1,651,089 + SM_b20631 0.56 -1.1
1,651,089 + SM_b20631 0.56 -0.2
1,651,120 - SM_b20631 0.57 -1.5
1,651,125 + SM_b20631 0.58 -0.5
1,651,125 + SM_b20631 0.58 +0.0
1,651,125 + SM_b20631 0.58 +0.1
1,651,126 - SM_b20631 0.58 -2.7
1,651,126 - SM_b20631 0.58 -0.3
1,651,126 - SM_b20631 0.58 -0.1
1,651,192 - SM_b20631 0.61 -0.1
1,651,197 + SM_b20631 0.61 +1.2
1,651,197 + SM_b20631 0.61 +0.3
1,651,197 + SM_b20631 0.61 +0.1
1,651,197 + SM_b20631 0.61 -1.1
1,651,198 - SM_b20631 0.61 -0.1
1,651,198 - SM_b20631 0.61 -0.4
1,651,198 - SM_b20631 0.61 -0.1
1,651,374 + SM_b20631 0.71 -0.9
1,651,420 - SM_b20631 0.73 -0.9
1,651,611 + SM_b20631 0.83 -0.3
1,651,612 - SM_b20631 0.83 -0.1
1,651,612 - SM_b20631 0.83 -0.2
1,651,675 - SM_b20631 0.86 -1.5
1,651,994 - -0.8
1,651,994 - +0.7
1,652,126 - SM_b20632 0.19 +1.0
1,652,359 + SM_b20632 0.46 +0.4
1,652,360 - SM_b20632 0.46 -0.1
1,652,360 - SM_b20632 0.46 +0.5

Or see this region's nucleotide sequence