Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20536 and SM_b20537 overlap by 4 nucleotides SM_b20537 and SM_b20538 are separated by 147 nucleotides
SM_b20536: SM_b20536 - hypothetical protein, at 559,366 to 561,219
_b20536
SM_b20537: SM_b20537 - transcriptional regulator, at 561,216 to 562,244
_b20537
SM_b20538: SM_b20538 - solute-binding protein, at 562,392 to 563,678
_b20538
Position (kb) 561
562
563 Strain fitness (log2 ratio) -2
-1
0
1 at 560.225 kb on + strand, within SM_b20536 at 560.225 kb on + strand, within SM_b20536 at 560.259 kb on + strand, within SM_b20536 at 560.260 kb on - strand, within SM_b20536 at 560.432 kb on + strand, within SM_b20536 at 560.433 kb on - strand, within SM_b20536 at 560.558 kb on + strand, within SM_b20536 at 560.558 kb on + strand, within SM_b20536 at 560.570 kb on + strand, within SM_b20536 at 560.570 kb on + strand, within SM_b20536 at 560.594 kb on + strand, within SM_b20536 at 560.594 kb on + strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.595 kb on - strand, within SM_b20536 at 560.645 kb on + strand, within SM_b20536 at 560.645 kb on + strand, within SM_b20536 at 560.645 kb on + strand, within SM_b20536 at 560.646 kb on - strand, within SM_b20536 at 560.646 kb on - strand, within SM_b20536 at 560.670 kb on - strand, within SM_b20536 at 560.751 kb on + strand, within SM_b20536 at 560.752 kb on - strand, within SM_b20536 at 560.762 kb on + strand, within SM_b20536 at 560.763 kb on - strand, within SM_b20536 at 560.789 kb on + strand, within SM_b20536 at 560.822 kb on - strand, within SM_b20536 at 561.113 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.212 kb on + strand at 561.213 kb on - strand at 561.213 kb on - strand at 561.213 kb on - strand at 561.213 kb on - strand at 561.436 kb on - strand, within SM_b20537 at 561.570 kb on - strand, within SM_b20537 at 561.771 kb on + strand, within SM_b20537 at 561.772 kb on - strand, within SM_b20537 at 561.772 kb on - strand, within SM_b20537 at 561.894 kb on - strand, within SM_b20537 at 562.003 kb on + strand, within SM_b20537 at 562.123 kb on - strand, within SM_b20537 at 562.123 kb on - strand, within SM_b20537 at 562.176 kb on - strand at 562.180 kb on - strand at 562.389 kb on - strand at 562.396 kb on + strand at 562.582 kb on + strand, within SM_b20538 at 562.693 kb on - strand, within SM_b20538 at 562.693 kb on - strand, within SM_b20538 at 562.842 kb on + strand, within SM_b20538 at 562.908 kb on + strand, within SM_b20538 at 562.908 kb on + strand, within SM_b20538 at 562.909 kb on - strand, within SM_b20538 at 562.972 kb on - strand, within SM_b20538 at 562.983 kb on + strand, within SM_b20538 at 562.983 kb on + strand, within SM_b20538 at 562.983 kb on + strand, within SM_b20538 at 562.984 kb on - strand, within SM_b20538 at 562.984 kb on - strand, within SM_b20538 at 562.989 kb on + strand, within SM_b20538 at 562.990 kb on - strand, within SM_b20538 at 563.031 kb on + strand, within SM_b20538 at 563.032 kb on - strand, within SM_b20538 at 563.079 kb on + strand, within SM_b20538 at 563.086 kb on - strand, within SM_b20538 at 563.182 kb on - strand, within SM_b20538 at 563.203 kb on - strand, within SM_b20538 at 563.203 kb on - strand, within SM_b20538 at 563.203 kb on - strand, within SM_b20538
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 560,225 + SM_b20536 0.46 -0.9 560,225 + SM_b20536 0.46 +1.4 560,259 + SM_b20536 0.48 -0.1 560,260 - SM_b20536 0.48 -0.1 560,432 + SM_b20536 0.57 -0.7 560,433 - SM_b20536 0.58 -0.6 560,558 + SM_b20536 0.64 -0.2 560,558 + SM_b20536 0.64 -0.2 560,570 + SM_b20536 0.65 -0.9 560,570 + SM_b20536 0.65 +0.6 560,594 + SM_b20536 0.66 +0.5 560,594 + SM_b20536 0.66 -0.3 560,595 - SM_b20536 0.66 +0.2 560,595 - SM_b20536 0.66 +1.1 560,595 - SM_b20536 0.66 +0.5 560,595 - SM_b20536 0.66 -0.8 560,595 - SM_b20536 0.66 +1.4 560,595 - SM_b20536 0.66 -0.6 560,645 + SM_b20536 0.69 -0.5 560,645 + SM_b20536 0.69 +0.2 560,645 + SM_b20536 0.69 +0.4 560,646 - SM_b20536 0.69 -0.4 560,646 - SM_b20536 0.69 -0.3 560,670 - SM_b20536 0.70 -0.6 560,751 + SM_b20536 0.75 +0.5 560,752 - SM_b20536 0.75 +0.3 560,762 + SM_b20536 0.75 +0.4 560,763 - SM_b20536 0.75 -2.0 560,789 + SM_b20536 0.77 +0.6 560,822 - SM_b20536 0.79 -0.1 561,113 + -1.0 561,212 + +0.0 561,212 + -1.2 561,212 + +1.1 561,212 + +0.3 561,212 + -1.4 561,213 - +0.2 561,213 - -0.1 561,213 - +0.2 561,213 - +0.0 561,436 - SM_b20537 0.21 -1.7 561,570 - SM_b20537 0.34 -0.3 561,771 + SM_b20537 0.54 -0.6 561,772 - SM_b20537 0.54 +0.1 561,772 - SM_b20537 0.54 -1.0 561,894 - SM_b20537 0.66 -0.4 562,003 + SM_b20537 0.76 -0.6 562,123 - SM_b20537 0.88 -0.2 562,123 - SM_b20537 0.88 -0.3 562,176 - +0.4 562,180 - -1.6 562,389 - +0.1 562,396 + +0.0 562,582 + SM_b20538 0.15 -0.8 562,693 - SM_b20538 0.23 -0.0 562,693 - SM_b20538 0.23 -0.3 562,842 + SM_b20538 0.35 +0.4 562,908 + SM_b20538 0.40 -1.4 562,908 + SM_b20538 0.40 +0.2 562,909 - SM_b20538 0.40 -1.2 562,972 - SM_b20538 0.45 +0.5 562,983 + SM_b20538 0.46 +0.1 562,983 + SM_b20538 0.46 -0.4 562,983 + SM_b20538 0.46 +0.4 562,984 - SM_b20538 0.46 -0.2 562,984 - SM_b20538 0.46 -1.2 562,989 + SM_b20538 0.46 +0.8 562,990 - SM_b20538 0.46 -0.4 563,031 + SM_b20538 0.50 -0.5 563,032 - SM_b20538 0.50 +0.1 563,079 + SM_b20538 0.53 -0.2 563,086 - SM_b20538 0.54 +1.3 563,182 - SM_b20538 0.61 -0.1 563,203 - SM_b20538 0.63 -0.7 563,203 - SM_b20538 0.63 +0.4 563,203 - SM_b20538 0.63 +0.1
Or see this region's nucleotide sequence