Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20312 and SM_b20313 are separated by 113 nucleotides SM_b20313 and SM_b20314 overlap by 32 nucleotides
SM_b20312: SM_b20312 - dihydroxyacetone kinase, at 312,527 to 314,614
_b20312
SM_b20313: SM_b20313 - glycerone kinase, at 314,728 to 315,411
_b20313
SM_b20314: SM_b20314 - glycerone kinase, at 315,380 to 316,372
_b20314
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.730 kb on + strand, within SM_b20312 at 313.888 kb on + strand, within SM_b20312 at 313.888 kb on - strand, within SM_b20312 at 313.993 kb on + strand, within SM_b20312 at 313.993 kb on + strand, within SM_b20312 at 313.994 kb on - strand, within SM_b20312 at 313.994 kb on - strand, within SM_b20312 at 314.092 kb on + strand, within SM_b20312 at 314.093 kb on - strand, within SM_b20312 at 314.093 kb on - strand, within SM_b20312 at 314.212 kb on + strand, within SM_b20312 at 314.490 kb on + strand at 314.493 kb on + strand at 314.515 kb on - strand at 314.625 kb on - strand at 315.019 kb on + strand, within SM_b20313 at 315.020 kb on - strand, within SM_b20313 at 315.020 kb on - strand, within SM_b20313 at 315.053 kb on + strand, within SM_b20313 at 315.294 kb on - strand, within SM_b20313 at 315.486 kb on + strand, within SM_b20314 at 315.486 kb on + strand, within SM_b20314 at 315.487 kb on - strand, within SM_b20314 at 315.487 kb on - strand, within SM_b20314 at 315.508 kb on - strand, within SM_b20314 at 315.562 kb on - strand, within SM_b20314 at 316.054 kb on - strand, within SM_b20314 at 316.054 kb on - strand, within SM_b20314
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 313,730 + SM_b20312 0.58 -1.8 313,888 + SM_b20312 0.65 -0.4 313,888 - SM_b20312 0.65 -1.1 313,993 + SM_b20312 0.70 -1.1 313,993 + SM_b20312 0.70 -1.4 313,994 - SM_b20312 0.70 -0.1 313,994 - SM_b20312 0.70 -0.9 314,092 + SM_b20312 0.75 +0.6 314,093 - SM_b20312 0.75 +0.3 314,093 - SM_b20312 0.75 -0.9 314,212 + SM_b20312 0.81 -3.0 314,490 + -1.7 314,493 + +3.0 314,515 - +0.1 314,625 - +0.4 315,019 + SM_b20313 0.43 +0.3 315,020 - SM_b20313 0.43 +2.4 315,020 - SM_b20313 0.43 -0.6 315,053 + SM_b20313 0.48 -1.1 315,294 - SM_b20313 0.83 -0.8 315,486 + SM_b20314 0.11 +0.0 315,486 + SM_b20314 0.11 +2.4 315,487 - SM_b20314 0.11 -0.6 315,487 - SM_b20314 0.11 -0.5 315,508 - SM_b20314 0.13 -0.2 315,562 - SM_b20314 0.18 -0.8 316,054 - SM_b20314 0.68 -0.4 316,054 - SM_b20314 0.68 -1.5
Or see this region's nucleotide sequence