Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4908

Experiment: KB with Paeonol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4907 and Psyr_4908 are separated by 143 nucleotidesPsyr_4908 and Psyr_4909 are separated by 57 nucleotides Psyr_4907: Psyr_4907 - PAS, at 5,819,521 to 5,820,867 _4907 Psyr_4908: Psyr_4908 - conserved hypothetical protein, at 5,821,011 to 5,821,496 _4908 Psyr_4909: Psyr_4909 - gamma-aminobutyrate:proton symporter, AAT family, at 5,821,554 to 5,822,945 _4909 Position (kb) 5821 5822Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5820.121 kb on + strand, within Psyr_4907at 5820.181 kb on - strand, within Psyr_4907at 5820.181 kb on - strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.220 kb on + strand, within Psyr_4907at 5820.221 kb on - strand, within Psyr_4907at 5820.221 kb on - strand, within Psyr_4907at 5820.221 kb on - strand, within Psyr_4907at 5820.221 kb on - strand, within Psyr_4907at 5820.221 kb on - strand, within Psyr_4907at 5820.221 kb on - strand, within Psyr_4907at 5820.254 kb on - strand, within Psyr_4907at 5820.335 kb on - strand, within Psyr_4907at 5820.624 kb on + strand, within Psyr_4907at 5820.624 kb on + strand, within Psyr_4907at 5820.625 kb on - strand, within Psyr_4907at 5820.625 kb on - strand, within Psyr_4907at 5820.932 kb on - strandat 5820.932 kb on - strandat 5821.166 kb on + strand, within Psyr_4908at 5821.166 kb on + strand, within Psyr_4908at 5821.166 kb on + strand, within Psyr_4908at 5821.216 kb on - strand, within Psyr_4908at 5821.380 kb on + strand, within Psyr_4908at 5821.380 kb on + strand, within Psyr_4908at 5821.380 kb on + strand, within Psyr_4908at 5821.381 kb on - strand, within Psyr_4908at 5821.443 kb on + strand, within Psyr_4908at 5821.443 kb on + strand, within Psyr_4908at 5821.444 kb on - strand, within Psyr_4908at 5821.444 kb on - strand, within Psyr_4908at 5821.444 kb on - strand, within Psyr_4908at 5821.602 kb on + strandat 5821.715 kb on + strand, within Psyr_4909at 5821.793 kb on + strand, within Psyr_4909at 5821.822 kb on + strand, within Psyr_4909at 5821.822 kb on + strand, within Psyr_4909at 5821.822 kb on + strand, within Psyr_4909at 5821.822 kb on + strand, within Psyr_4909at 5821.823 kb on - strand, within Psyr_4909at 5821.823 kb on - strand, within Psyr_4909at 5821.823 kb on - strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.888 kb on + strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.889 kb on - strand, within Psyr_4909at 5821.949 kb on + strand, within Psyr_4909at 5822.029 kb on + strand, within Psyr_4909at 5822.030 kb on - strand, within Psyr_4909at 5822.128 kb on + strand, within Psyr_4909at 5822.129 kb on - strand, within Psyr_4909at 5822.200 kb on + strand, within Psyr_4909at 5822.200 kb on + strand, within Psyr_4909at 5822.200 kb on + strand, within Psyr_4909at 5822.200 kb on + strand, within Psyr_4909at 5822.201 kb on - strand, within Psyr_4909at 5822.201 kb on - strand, within Psyr_4909

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
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5,820,121 + Psyr_4907 0.45 +0.7
5,820,181 - Psyr_4907 0.49 +0.3
5,820,181 - Psyr_4907 0.49 +0.5
5,820,220 + Psyr_4907 0.52 +0.4
5,820,220 + Psyr_4907 0.52 +0.4
5,820,220 + Psyr_4907 0.52 +1.0
5,820,220 + Psyr_4907 0.52 -0.3
5,820,220 + Psyr_4907 0.52 +0.5
5,820,220 + Psyr_4907 0.52 -0.5
5,820,220 + Psyr_4907 0.52 -0.6
5,820,220 + Psyr_4907 0.52 +0.2
5,820,220 + Psyr_4907 0.52 -0.7
5,820,220 + Psyr_4907 0.52 -1.4
5,820,220 + Psyr_4907 0.52 +0.4
5,820,220 + Psyr_4907 0.52 +0.7
5,820,220 + Psyr_4907 0.52 -0.9
5,820,220 + Psyr_4907 0.52 -0.6
5,820,220 + Psyr_4907 0.52 -2.0
5,820,220 + Psyr_4907 0.52 +0.1
5,820,220 + Psyr_4907 0.52 -2.7
5,820,220 + Psyr_4907 0.52 +0.6
5,820,220 + Psyr_4907 0.52 -0.9
5,820,220 + Psyr_4907 0.52 +0.2
5,820,220 + Psyr_4907 0.52 +0.6
5,820,220 + Psyr_4907 0.52 -0.7
5,820,220 + Psyr_4907 0.52 -1.6
5,820,221 - Psyr_4907 0.52 -0.2
5,820,221 - Psyr_4907 0.52 -0.5
5,820,221 - Psyr_4907 0.52 +1.4
5,820,221 - Psyr_4907 0.52 +0.9
5,820,221 - Psyr_4907 0.52 +0.3
5,820,221 - Psyr_4907 0.52 -0.3
5,820,254 - Psyr_4907 0.54 -0.9
5,820,335 - Psyr_4907 0.60 +0.6
5,820,624 + Psyr_4907 0.82 -1.4
5,820,624 + Psyr_4907 0.82 -0.1
5,820,625 - Psyr_4907 0.82 +1.2
5,820,625 - Psyr_4907 0.82 -1.6
5,820,932 - -0.4
5,820,932 - -0.2
5,821,166 + Psyr_4908 0.32 -1.8
5,821,166 + Psyr_4908 0.32 +0.1
5,821,166 + Psyr_4908 0.32 +0.2
5,821,216 - Psyr_4908 0.42 +0.8
5,821,380 + Psyr_4908 0.76 -3.6
5,821,380 + Psyr_4908 0.76 -1.4
5,821,380 + Psyr_4908 0.76 -1.1
5,821,381 - Psyr_4908 0.76 -1.6
5,821,443 + Psyr_4908 0.89 -1.2
5,821,443 + Psyr_4908 0.89 -0.0
5,821,444 - Psyr_4908 0.89 -0.5
5,821,444 - Psyr_4908 0.89 +0.5
5,821,444 - Psyr_4908 0.89 -1.0
5,821,602 + +0.5
5,821,715 + Psyr_4909 0.12 -0.2
5,821,793 + Psyr_4909 0.17 -1.1
5,821,822 + Psyr_4909 0.19 +1.7
5,821,822 + Psyr_4909 0.19 -0.7
5,821,822 + Psyr_4909 0.19 +1.7
5,821,822 + Psyr_4909 0.19 +0.2
5,821,823 - Psyr_4909 0.19 -0.6
5,821,823 - Psyr_4909 0.19 -1.2
5,821,823 - Psyr_4909 0.19 -0.0
5,821,888 + Psyr_4909 0.24 -1.3
5,821,888 + Psyr_4909 0.24 -0.1
5,821,888 + Psyr_4909 0.24 -0.3
5,821,888 + Psyr_4909 0.24 +0.8
5,821,888 + Psyr_4909 0.24 +2.0
5,821,888 + Psyr_4909 0.24 -0.4
5,821,888 + Psyr_4909 0.24 -0.1
5,821,888 + Psyr_4909 0.24 +0.4
5,821,888 + Psyr_4909 0.24 +0.3
5,821,889 - Psyr_4909 0.24 -0.8
5,821,889 - Psyr_4909 0.24 +2.3
5,821,889 - Psyr_4909 0.24 -0.4
5,821,889 - Psyr_4909 0.24 -0.1
5,821,889 - Psyr_4909 0.24 -0.5
5,821,889 - Psyr_4909 0.24 -0.4
5,821,889 - Psyr_4909 0.24 +1.3
5,821,889 - Psyr_4909 0.24 -0.5
5,821,889 - Psyr_4909 0.24 -0.1
5,821,949 + Psyr_4909 0.28 +0.3
5,822,029 + Psyr_4909 0.34 -0.0
5,822,030 - Psyr_4909 0.34 +1.1
5,822,128 + Psyr_4909 0.41 +5.0
5,822,129 - Psyr_4909 0.41 +0.2
5,822,200 + Psyr_4909 0.46 -2.8
5,822,200 + Psyr_4909 0.46 +0.8
5,822,200 + Psyr_4909 0.46 +0.3
5,822,200 + Psyr_4909 0.46 +0.8
5,822,201 - Psyr_4909 0.46 +0.9
5,822,201 - Psyr_4909 0.46 -0.0

Or see this region's nucleotide sequence