Experiment: KB with Paeonol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4577 and Psyr_4578 are separated by 11 nucleotides Psyr_4578 and Psyr_4579 are separated by 34 nucleotides Psyr_4579 and Psyr_4580 overlap by 4 nucleotides
Psyr_4577: Psyr_4577 - Cyclic nucleotide-binding:Bacterial regulatory protein, Crp, at 5,439,759 to 5,440,403
_4577
Psyr_4578: Psyr_4578 - conserved hypothetical protein, at 5,440,415 to 5,441,110
_4578
Psyr_4579: Psyr_4579 - indole-3-glycerol phosphate synthase, at 5,441,145 to 5,441,981
_4579
Psyr_4580: Psyr_4580 - anthranilate phosphoribosyltransferase, at 5,441,978 to 5,443,039
_4580
Position (kb) 5441
5442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5440.151 kb on + strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.152 kb on - strand, within Psyr_4577 at 5440.152 kb on - strand, within Psyr_4577 at 5440.413 kb on - strand at 5440.413 kb on - strand at 5440.413 kb on - strand at 5440.488 kb on + strand, within Psyr_4578 at 5440.488 kb on + strand, within Psyr_4578 at 5440.488 kb on + strand, within Psyr_4578 at 5440.778 kb on + strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.800 kb on - strand, within Psyr_4578 at 5440.800 kb on - strand, within Psyr_4578 at 5440.801 kb on + strand, within Psyr_4578 at 5440.801 kb on + strand, within Psyr_4578 at 5440.836 kb on + strand, within Psyr_4578 at 5440.837 kb on - strand, within Psyr_4578 at 5440.837 kb on - strand, within Psyr_4578 at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.166 kb on + strand at 5441.167 kb on - strand at 5441.257 kb on + strand, within Psyr_4579 at 5441.360 kb on + strand, within Psyr_4579 at 5441.360 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.476 kb on - strand, within Psyr_4579 at 5441.476 kb on - strand, within Psyr_4579 at 5441.659 kb on + strand, within Psyr_4579 at 5441.729 kb on - strand, within Psyr_4579 at 5441.965 kb on - strand at 5442.114 kb on + strand, within Psyr_4580 at 5442.115 kb on - strand, within Psyr_4580 at 5442.286 kb on - strand, within Psyr_4580 at 5442.493 kb on + strand, within Psyr_4580 at 5442.493 kb on + strand, within Psyr_4580 at 5442.494 kb on - strand, within Psyr_4580 at 5442.633 kb on + strand, within Psyr_4580 at 5442.634 kb on - strand, within Psyr_4580
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM remove 5,440,151 + Psyr_4577 0.61 +0.5 5,440,151 + Psyr_4577 0.61 -0.1 5,440,151 + Psyr_4577 0.61 -0.2 5,440,152 - Psyr_4577 0.61 +0.1 5,440,152 - Psyr_4577 0.61 +0.2 5,440,413 - +1.0 5,440,413 - -0.1 5,440,413 - +0.1 5,440,488 + Psyr_4578 0.10 -0.6 5,440,488 + Psyr_4578 0.10 -2.5 5,440,488 + Psyr_4578 0.10 +1.1 5,440,778 + Psyr_4578 0.52 +1.2 5,440,779 - Psyr_4578 0.52 +0.9 5,440,779 - Psyr_4578 0.52 +0.7 5,440,779 - Psyr_4578 0.52 +1.0 5,440,799 + Psyr_4578 0.55 +1.0 5,440,799 + Psyr_4578 0.55 +0.1 5,440,799 + Psyr_4578 0.55 +1.6 5,440,800 - Psyr_4578 0.55 -0.8 5,440,800 - Psyr_4578 0.55 -1.3 5,440,801 + Psyr_4578 0.55 +1.3 5,440,801 + Psyr_4578 0.55 +0.4 5,440,836 + Psyr_4578 0.60 +0.2 5,440,837 - Psyr_4578 0.61 +0.8 5,440,837 - Psyr_4578 0.61 +1.0 5,441,087 + +0.2 5,441,087 + -3.5 5,441,087 + -0.4 5,441,087 + -0.8 5,441,087 + -0.1 5,441,087 + +1.2 5,441,087 + +0.9 5,441,087 + -0.2 5,441,087 + +1.2 5,441,087 + +0.0 5,441,087 + -0.5 5,441,087 + +1.4 5,441,087 + -0.6 5,441,087 + -0.6 5,441,087 + +0.7 5,441,087 + +1.2 5,441,087 + -1.0 5,441,087 + +0.2 5,441,087 + +0.7 5,441,087 + -0.3 5,441,087 + +0.4 5,441,087 + -0.8 5,441,087 + -2.5 5,441,087 + -2.9 5,441,087 + -0.0 5,441,087 + +1.5 5,441,087 + -0.5 5,441,087 + +1.0 5,441,087 + +1.4 5,441,087 + +0.4 5,441,087 + -0.6 5,441,087 + -0.1 5,441,088 - -1.8 5,441,088 - +1.4 5,441,088 - -0.4 5,441,088 - +0.2 5,441,088 - +1.1 5,441,088 - +1.4 5,441,088 - +0.6 5,441,088 - +0.5 5,441,088 - +0.0 5,441,088 - -0.3 5,441,088 - -0.0 5,441,088 - -0.8 5,441,088 - -0.4 5,441,088 - -0.4 5,441,088 - +0.5 5,441,088 - -0.0 5,441,088 - -0.9 5,441,166 + -1.8 5,441,167 - -0.9 5,441,257 + Psyr_4579 0.13 +0.7 5,441,360 + Psyr_4579 0.26 +0.0 5,441,360 + Psyr_4579 0.26 +2.7 5,441,384 + Psyr_4579 0.29 -0.4 5,441,384 + Psyr_4579 0.29 +1.1 5,441,384 + Psyr_4579 0.29 +1.1 5,441,384 + Psyr_4579 0.29 +0.2 5,441,385 - Psyr_4579 0.29 +1.1 5,441,385 - Psyr_4579 0.29 -0.4 5,441,385 - Psyr_4579 0.29 +1.0 5,441,475 + Psyr_4579 0.39 -1.0 5,441,475 + Psyr_4579 0.39 +1.7 5,441,475 + Psyr_4579 0.39 +0.4 5,441,475 + Psyr_4579 0.39 -0.8 5,441,475 + Psyr_4579 0.39 -0.8 5,441,476 - Psyr_4579 0.40 -0.9 5,441,476 - Psyr_4579 0.40 -1.1 5,441,659 + Psyr_4579 0.61 +0.3 5,441,729 - Psyr_4579 0.70 -0.2 5,441,965 - -0.1 5,442,114 + Psyr_4580 0.13 +0.1 5,442,115 - Psyr_4580 0.13 -1.6 5,442,286 - Psyr_4580 0.29 -2.1 5,442,493 + Psyr_4580 0.48 -3.5 5,442,493 + Psyr_4580 0.48 -3.3 5,442,494 - Psyr_4580 0.49 -1.8 5,442,633 + Psyr_4580 0.62 -1.6 5,442,634 - Psyr_4580 0.62 -1.1
Or see this region's nucleotide sequence