Experiment: KB with Paeonol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4433 and Psyr_4434 are separated by 10 nucleotides Psyr_4434 and Psyr_4435 overlap by 4 nucleotides Psyr_4435 and Psyr_4436 are separated by 140 nucleotides Psyr_4436 and Psyr_4437 are separated by 51 nucleotides Psyr_4437 and Psyr_4438 are separated by 13 nucleotides
Psyr_4433: Psyr_4433 - GCN5-related N-acetyltransferase, at 5,300,980 to 5,301,537
_4433
Psyr_4434: Psyr_4434 - GCN5-related N-acetyltransferase, at 5,301,548 to 5,302,081
_4434
Psyr_4435: Psyr_4435 - Urease, beta subunit, at 5,302,078 to 5,302,383
_4435
Psyr_4436: Psyr_4436 - urease, Metallo peptidase, MEROPS family M38, at 5,302,524 to 5,304,224
_4436
Psyr_4437: Psyr_4437 - hypothetical protein, at 5,304,276 to 5,304,884
_4437
Psyr_4438: Psyr_4438 - hypothetical protein, at 5,304,898 to 5,305,329
_4438
Position (kb) 5302
5303
5304
5305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5301.535 kb on + strand at 5301.686 kb on + strand, within Psyr_4434 at 5301.686 kb on + strand, within Psyr_4434 at 5301.687 kb on - strand, within Psyr_4434 at 5301.687 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.983 kb on + strand, within Psyr_4434 at 5301.984 kb on - strand, within Psyr_4434 at 5301.984 kb on - strand, within Psyr_4434 at 5302.011 kb on - strand, within Psyr_4434 at 5302.053 kb on - strand at 5302.053 kb on - strand at 5302.381 kb on + strand at 5302.381 kb on + strand at 5302.381 kb on + strand at 5302.382 kb on - strand at 5302.382 kb on - strand at 5302.428 kb on + strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.477 kb on - strand at 5302.477 kb on - strand at 5302.477 kb on - strand at 5302.516 kb on + strand at 5302.531 kb on + strand at 5302.532 kb on - strand at 5302.532 kb on - strand at 5302.532 kb on - strand at 5302.545 kb on + strand at 5302.546 kb on - strand at 5302.635 kb on + strand at 5302.636 kb on - strand at 5302.636 kb on - strand at 5302.636 kb on - strand at 5302.797 kb on - strand, within Psyr_4436 at 5303.236 kb on - strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.802 kb on - strand, within Psyr_4436 at 5303.802 kb on - strand, within Psyr_4436 at 5304.109 kb on - strand at 5304.109 kb on - strand at 5304.109 kb on - strand at 5304.141 kb on + strand at 5304.141 kb on + strand at 5304.142 kb on - strand at 5304.169 kb on + strand at 5304.170 kb on - strand at 5304.210 kb on + strand at 5304.261 kb on + strand at 5304.261 kb on + strand at 5304.262 kb on - strand at 5304.265 kb on + strand at 5304.265 kb on + strand at 5304.266 kb on - strand at 5304.266 kb on - strand at 5304.277 kb on + strand at 5304.389 kb on + strand, within Psyr_4437 at 5304.403 kb on + strand, within Psyr_4437 at 5304.403 kb on + strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.478 kb on - strand, within Psyr_4437 at 5304.478 kb on - strand, within Psyr_4437 at 5304.506 kb on + strand, within Psyr_4437 at 5304.506 kb on + strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand at 5304.844 kb on - strand at 5304.900 kb on - strand at 5305.018 kb on + strand, within Psyr_4438 at 5305.018 kb on + strand, within Psyr_4438 at 5305.018 kb on + strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.026 kb on - strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.113 kb on - strand, within Psyr_4438 at 5305.113 kb on - strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.181 kb on - strand, within Psyr_4438
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM remove 5,301,535 + +0.6 5,301,686 + Psyr_4434 0.26 +0.5 5,301,686 + Psyr_4434 0.26 +0.2 5,301,687 - Psyr_4434 0.26 -0.8 5,301,687 - Psyr_4434 0.26 -0.1 5,301,969 - Psyr_4434 0.79 +0.1 5,301,969 - Psyr_4434 0.79 +0.3 5,301,969 - Psyr_4434 0.79 +0.5 5,301,969 - Psyr_4434 0.79 +1.0 5,301,983 + Psyr_4434 0.81 +0.2 5,301,984 - Psyr_4434 0.82 -0.2 5,301,984 - Psyr_4434 0.82 +1.2 5,302,011 - Psyr_4434 0.87 -0.2 5,302,053 - +0.3 5,302,053 - -1.5 5,302,381 + -0.4 5,302,381 + +0.2 5,302,381 + +2.2 5,302,382 - +0.1 5,302,382 - +1.9 5,302,428 + -0.8 5,302,429 - -0.5 5,302,429 - -0.4 5,302,429 - -1.4 5,302,429 - +0.2 5,302,429 - -0.4 5,302,429 - +0.5 5,302,476 + +0.6 5,302,476 + -0.0 5,302,476 + -2.8 5,302,476 + +1.5 5,302,476 + +0.5 5,302,476 + +0.4 5,302,476 + -0.5 5,302,476 + +1.4 5,302,476 + +0.6 5,302,476 + -0.3 5,302,476 + -2.2 5,302,476 + -1.4 5,302,476 + -0.1 5,302,477 - +2.2 5,302,477 - -2.0 5,302,477 - +0.8 5,302,516 + -0.0 5,302,531 + +2.2 5,302,532 - +0.5 5,302,532 - +1.2 5,302,532 - -1.2 5,302,545 + -0.0 5,302,546 - -0.4 5,302,635 + +0.3 5,302,636 - +0.8 5,302,636 - -0.8 5,302,636 - -1.9 5,302,797 - Psyr_4436 0.16 -0.4 5,303,236 - Psyr_4436 0.42 -0.5 5,303,331 + Psyr_4436 0.47 -1.7 5,303,331 + Psyr_4436 0.47 +0.8 5,303,331 + Psyr_4436 0.47 -0.0 5,303,331 + Psyr_4436 0.47 +1.0 5,303,332 - Psyr_4436 0.48 +0.0 5,303,332 - Psyr_4436 0.48 -0.6 5,303,332 - Psyr_4436 0.48 -0.2 5,303,332 - Psyr_4436 0.48 -1.4 5,303,332 - Psyr_4436 0.48 -1.8 5,303,727 + Psyr_4436 0.71 +1.2 5,303,727 + Psyr_4436 0.71 -0.3 5,303,727 + Psyr_4436 0.71 +0.2 5,303,727 + Psyr_4436 0.71 +0.4 5,303,727 + Psyr_4436 0.71 +0.0 5,303,728 - Psyr_4436 0.71 -0.7 5,303,728 - Psyr_4436 0.71 -0.6 5,303,728 - Psyr_4436 0.71 -0.4 5,303,739 + Psyr_4436 0.71 +0.2 5,303,739 + Psyr_4436 0.71 -0.8 5,303,739 + Psyr_4436 0.71 -0.5 5,303,739 + Psyr_4436 0.71 -1.8 5,303,739 + Psyr_4436 0.71 +0.8 5,303,739 + Psyr_4436 0.71 -2.6 5,303,739 + Psyr_4436 0.71 +1.2 5,303,740 - Psyr_4436 0.71 -0.2 5,303,740 - Psyr_4436 0.71 -2.6 5,303,740 - Psyr_4436 0.71 -0.2 5,303,740 - Psyr_4436 0.71 +0.5 5,303,740 - Psyr_4436 0.71 -1.5 5,303,802 - Psyr_4436 0.75 -0.1 5,303,802 - Psyr_4436 0.75 +0.6 5,304,109 - -0.2 5,304,109 - -1.2 5,304,109 - -0.3 5,304,141 + +0.7 5,304,141 + +0.6 5,304,142 - +0.4 5,304,169 + +2.5 5,304,170 - -0.1 5,304,210 + +0.2 5,304,261 + -0.2 5,304,261 + +1.2 5,304,262 - -2.9 5,304,265 + -0.2 5,304,265 + +1.9 5,304,266 - -0.1 5,304,266 - +0.5 5,304,277 + -1.2 5,304,389 + Psyr_4437 0.19 -0.8 5,304,403 + Psyr_4437 0.21 -0.1 5,304,403 + Psyr_4437 0.21 -0.1 5,304,404 - Psyr_4437 0.21 +2.2 5,304,404 - Psyr_4437 0.21 +0.1 5,304,404 - Psyr_4437 0.21 +0.5 5,304,478 - Psyr_4437 0.33 +0.5 5,304,478 - Psyr_4437 0.33 +1.8 5,304,506 + Psyr_4437 0.38 +2.2 5,304,506 + Psyr_4437 0.38 +0.9 5,304,507 - Psyr_4437 0.38 -0.6 5,304,507 - Psyr_4437 0.38 +0.3 5,304,507 - Psyr_4437 0.38 +0.1 5,304,507 - +2.2 5,304,844 - +0.5 5,304,900 - +1.4 5,305,018 + Psyr_4438 0.28 -1.3 5,305,018 + Psyr_4438 0.28 -0.5 5,305,018 + Psyr_4438 0.28 +0.1 5,305,019 - Psyr_4438 0.28 -0.6 5,305,019 - Psyr_4438 0.28 -0.4 5,305,019 - Psyr_4438 0.28 +1.2 5,305,019 - Psyr_4438 0.28 +0.5 5,305,026 - Psyr_4438 0.30 -1.2 5,305,112 + Psyr_4438 0.50 +0.3 5,305,112 + Psyr_4438 0.50 +1.0 5,305,112 + Psyr_4438 0.50 +0.7 5,305,113 - Psyr_4438 0.50 -1.2 5,305,113 - Psyr_4438 0.50 -1.7 5,305,180 + Psyr_4438 0.65 -1.4 5,305,180 + Psyr_4438 0.65 -2.1 5,305,180 + Psyr_4438 0.65 +0.0 5,305,181 - Psyr_4438 0.66 -0.2
Or see this region's nucleotide sequence