Experiment: KB with Paeonol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3609 and Psyr_3610 are separated by 50 nucleotides Psyr_3610 and Psyr_3611 overlap by 4 nucleotides Psyr_3611 and Psyr_3612 are separated by 46 nucleotides
Psyr_3609: Psyr_3609 - conserved hypothetical protein, at 4,293,159 to 4,293,917
_3609
Psyr_3610: Psyr_3610 - GAF, at 4,293,968 to 4,294,450
_3610
Psyr_3611: Psyr_3611 - Protein of unknown function DUF815, at 4,294,447 to 4,295,337
_3611
Psyr_3612: Psyr_3612 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,295,384 to 4,297,774
_3612
Position (kb) 4294
4295
4296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4293.469 kb on + strand, within Psyr_3609 at 4293.469 kb on + strand, within Psyr_3609 at 4293.470 kb on - strand, within Psyr_3609 at 4293.470 kb on - strand, within Psyr_3609 at 4293.470 kb on - strand, within Psyr_3609 at 4293.721 kb on + strand, within Psyr_3609 at 4293.721 kb on + strand, within Psyr_3609 at 4293.722 kb on - strand, within Psyr_3609 at 4293.722 kb on - strand, within Psyr_3609 at 4293.722 kb on - strand, within Psyr_3609 at 4293.726 kb on + strand, within Psyr_3609 at 4293.726 kb on + strand, within Psyr_3609 at 4293.727 kb on - strand, within Psyr_3609 at 4293.756 kb on + strand, within Psyr_3609 at 4293.756 kb on + strand, within Psyr_3609 at 4293.756 kb on + strand, within Psyr_3609 at 4293.757 kb on - strand, within Psyr_3609 at 4293.757 kb on - strand, within Psyr_3609 at 4293.757 kb on - strand, within Psyr_3609 at 4293.757 kb on - strand, within Psyr_3609 at 4293.808 kb on + strand, within Psyr_3609 at 4293.909 kb on + strand at 4293.909 kb on + strand at 4293.910 kb on - strand at 4293.910 kb on - strand at 4294.230 kb on - strand, within Psyr_3610 at 4294.287 kb on + strand, within Psyr_3610 at 4294.288 kb on - strand, within Psyr_3610 at 4294.323 kb on + strand, within Psyr_3610 at 4294.634 kb on + strand, within Psyr_3611 at 4294.802 kb on + strand, within Psyr_3611 at 4294.802 kb on + strand, within Psyr_3611 at 4294.803 kb on - strand, within Psyr_3611 at 4294.846 kb on + strand, within Psyr_3611 at 4294.847 kb on - strand, within Psyr_3611 at 4295.109 kb on + strand, within Psyr_3611 at 4295.348 kb on + strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.350 kb on + strand at 4295.350 kb on + strand at 4295.350 kb on + strand at 4295.350 kb on + strand at 4295.351 kb on - strand at 4295.351 kb on - strand at 4295.351 kb on - strand at 4295.351 kb on - strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.355 kb on - strand at 4295.355 kb on - strand at 4295.362 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.429 kb on - strand at 4295.429 kb on - strand at 4295.429 kb on - strand at 4295.430 kb on + strand at 4295.430 kb on + strand at 4295.430 kb on + strand at 4295.431 kb on - strand at 4295.431 kb on - strand at 4295.431 kb on - strand at 4295.431 kb on - strand at 4295.612 kb on + strand at 4295.612 kb on + strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.614 kb on + strand at 4295.614 kb on + strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.843 kb on + strand, within Psyr_3612 at 4295.844 kb on - strand, within Psyr_3612 at 4295.961 kb on - strand, within Psyr_3612 at 4296.043 kb on - strand, within Psyr_3612 at 4296.056 kb on + strand, within Psyr_3612 at 4296.261 kb on + strand, within Psyr_3612 at 4296.261 kb on + strand, within Psyr_3612 at 4296.261 kb on + strand, within Psyr_3612 at 4296.262 kb on - strand, within Psyr_3612 at 4296.262 kb on - strand, within Psyr_3612 at 4296.262 kb on - strand, within Psyr_3612 at 4296.334 kb on + strand, within Psyr_3612 at 4296.334 kb on + strand, within Psyr_3612 at 4296.335 kb on - strand, within Psyr_3612
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM remove 4,293,469 + Psyr_3609 0.41 -0.5 4,293,469 + Psyr_3609 0.41 +0.1 4,293,470 - Psyr_3609 0.41 -0.5 4,293,470 - Psyr_3609 0.41 -2.9 4,293,470 - Psyr_3609 0.41 +0.7 4,293,721 + Psyr_3609 0.74 +1.7 4,293,721 + Psyr_3609 0.74 +1.0 4,293,722 - Psyr_3609 0.74 +1.5 4,293,722 - Psyr_3609 0.74 -1.4 4,293,722 - Psyr_3609 0.74 -0.7 4,293,726 + Psyr_3609 0.75 -0.2 4,293,726 + Psyr_3609 0.75 -0.7 4,293,727 - Psyr_3609 0.75 +0.1 4,293,756 + Psyr_3609 0.79 +1.2 4,293,756 + Psyr_3609 0.79 -0.4 4,293,756 + Psyr_3609 0.79 +0.7 4,293,757 - Psyr_3609 0.79 -0.7 4,293,757 - Psyr_3609 0.79 -0.9 4,293,757 - Psyr_3609 0.79 -0.8 4,293,757 - Psyr_3609 0.79 +0.3 4,293,808 + Psyr_3609 0.86 -0.7 4,293,909 + -0.8 4,293,909 + +0.0 4,293,910 - -1.6 4,293,910 - +0.4 4,294,230 - Psyr_3610 0.54 +0.1 4,294,287 + Psyr_3610 0.66 -1.7 4,294,288 - Psyr_3610 0.66 +0.2 4,294,323 + Psyr_3610 0.73 +0.6 4,294,634 + Psyr_3611 0.21 +1.7 4,294,802 + Psyr_3611 0.40 +0.5 4,294,802 + Psyr_3611 0.40 +0.8 4,294,803 - Psyr_3611 0.40 +0.5 4,294,846 + Psyr_3611 0.45 +1.6 4,294,847 - Psyr_3611 0.45 +0.7 4,295,109 + Psyr_3611 0.74 +1.2 4,295,348 + -1.1 4,295,349 - +0.9 4,295,349 - -1.2 4,295,349 - +0.3 4,295,349 - +0.1 4,295,349 - -0.9 4,295,349 - +0.2 4,295,349 - +2.5 4,295,350 + -1.1 4,295,350 + +1.5 4,295,350 + +0.6 4,295,350 + +0.5 4,295,351 - +0.2 4,295,351 - -0.1 4,295,351 - -0.5 4,295,351 - -1.4 4,295,354 + -0.5 4,295,354 + -0.1 4,295,354 + +0.7 4,295,354 + -0.7 4,295,354 + +0.3 4,295,354 + +0.7 4,295,354 + +1.2 4,295,355 - -0.3 4,295,355 - -0.3 4,295,362 + -0.7 4,295,428 + -1.2 4,295,428 + +0.0 4,295,428 + -0.9 4,295,428 + +0.7 4,295,428 + +0.2 4,295,429 - +1.9 4,295,429 - -0.4 4,295,429 - +0.2 4,295,430 + -0.5 4,295,430 + -2.2 4,295,430 + -0.8 4,295,431 - +0.4 4,295,431 - +0.5 4,295,431 - +2.0 4,295,431 - +0.7 4,295,612 + +0.1 4,295,612 + -0.9 4,295,613 - +1.1 4,295,613 - -0.0 4,295,613 - -0.6 4,295,613 - -0.7 4,295,613 - +2.9 4,295,614 + +1.2 4,295,614 + -1.2 4,295,615 - +3.3 4,295,615 - -0.1 4,295,615 - -1.7 4,295,615 - -0.1 4,295,615 - -0.8 4,295,843 + Psyr_3612 0.19 -0.1 4,295,844 - Psyr_3612 0.19 +0.2 4,295,961 - Psyr_3612 0.24 -0.1 4,296,043 - Psyr_3612 0.28 +0.2 4,296,056 + Psyr_3612 0.28 -0.4 4,296,261 + Psyr_3612 0.37 +3.1 4,296,261 + Psyr_3612 0.37 +1.5 4,296,261 + Psyr_3612 0.37 +0.5 4,296,262 - Psyr_3612 0.37 +1.8 4,296,262 - Psyr_3612 0.37 -0.5 4,296,262 - Psyr_3612 0.37 -2.1 4,296,334 + Psyr_3612 0.40 +1.9 4,296,334 + Psyr_3612 0.40 -1.6 4,296,335 - Psyr_3612 0.40 -1.1
Or see this region's nucleotide sequence