Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2668

Experiment: KB with Paeonol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2667 and Psyr_2668 are separated by 125 nucleotidesPsyr_2668 and Psyr_2669 are separated by 65 nucleotidesPsyr_2669 and Psyr_2670 are separated by 5 nucleotides Psyr_2667: Psyr_2667 - Transposase Tn3, at 3,236,917 to 3,239,802 _2667 Psyr_2668: Psyr_2668 - Helix-turn-helix, Fis-type, at 3,239,928 to 3,240,542 _2668 Psyr_2669: Psyr_2669 - Aminoglycoside phosphotransferase, at 3,240,608 to 3,241,411 _2669 Psyr_2670: Psyr_2670 - Aminoglycoside/hydroxyurea antibiotic resistance kinase, at 3,241,417 to 3,242,247 _2670 Position (kb) 3239 3240 3241Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3239.018 kb on + strand, within Psyr_2667at 3239.022 kb on - strand, within Psyr_2667at 3239.109 kb on - strand, within Psyr_2667at 3239.109 kb on - strand, within Psyr_2667at 3239.244 kb on + strand, within Psyr_2667at 3239.244 kb on + strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.365 kb on + strand, within Psyr_2667at 3239.472 kb on - strand, within Psyr_2667at 3239.525 kb on + strandat 3239.525 kb on + strandat 3239.525 kb on + strandat 3239.526 kb on - strandat 3239.526 kb on - strandat 3239.526 kb on - strandat 3239.530 kb on + strandat 3239.531 kb on - strandat 3239.688 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.717 kb on + strandat 3239.718 kb on - strandat 3239.782 kb on + strandat 3239.783 kb on - strandat 3239.802 kb on + strandat 3239.802 kb on + strandat 3239.803 kb on - strandat 3239.803 kb on - strandat 3239.865 kb on + strandat 3239.925 kb on + strandat 3239.925 kb on + strandat 3240.026 kb on + strand, within Psyr_2668at 3240.027 kb on - strand, within Psyr_2668at 3240.027 kb on - strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.031 kb on - strand, within Psyr_2668at 3240.536 kb on + strandat 3240.536 kb on + strandat 3240.536 kb on + strandat 3240.536 kb on + strandat 3240.537 kb on - strandat 3240.537 kb on - strandat 3240.537 kb on - strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.620 kb on - strandat 3241.067 kb on - strand, within Psyr_2669at 3241.139 kb on - strand, within Psyr_2669at 3241.189 kb on + strand, within Psyr_2669at 3241.247 kb on + strandat 3241.248 kb on - strand, within Psyr_2669at 3241.329 kb on + strand, within Psyr_2669at 3241.329 kb on + strand, within Psyr_2669at 3241.330 kb on - strand, within Psyr_2669at 3241.330 kb on - strand, within Psyr_2669at 3241.338 kb on + strandat 3241.338 kb on + strandat 3241.338 kb on + strandat 3241.339 kb on - strandat 3241.339 kb on - strandat 3241.339 kb on - strandat 3241.339 kb on - strandat 3241.339 kb on - strandat 3241.379 kb on + strandat 3241.379 kb on + strandat 3241.379 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
remove
3,239,018 + Psyr_2667 0.73 +1.1
3,239,022 - Psyr_2667 0.73 -1.1
3,239,109 - Psyr_2667 0.76 +0.3
3,239,109 - Psyr_2667 0.76 -0.3
3,239,244 + Psyr_2667 0.81 +0.6
3,239,244 + Psyr_2667 0.81 +0.5
3,239,245 - Psyr_2667 0.81 -3.3
3,239,245 - Psyr_2667 0.81 +0.6
3,239,245 - Psyr_2667 0.81 -0.8
3,239,245 - Psyr_2667 0.81 +1.3
3,239,365 + Psyr_2667 0.85 +2.3
3,239,472 - Psyr_2667 0.89 +0.4
3,239,525 + -2.1
3,239,525 + -0.3
3,239,525 + +0.7
3,239,526 - -0.7
3,239,526 - +2.8
3,239,526 - +0.9
3,239,530 + +0.8
3,239,531 - -2.2
3,239,688 + -1.5
3,239,715 + +0.6
3,239,715 + +1.6
3,239,715 + -0.4
3,239,715 + +1.3
3,239,715 + +1.9
3,239,715 + -0.7
3,239,715 + -0.3
3,239,716 - +0.8
3,239,716 - +0.7
3,239,716 - +0.3
3,239,716 - +0.5
3,239,716 - -0.2
3,239,716 - +0.5
3,239,717 + -0.9
3,239,718 - +0.0
3,239,782 + +0.4
3,239,783 - +0.4
3,239,802 + +0.6
3,239,802 + -0.7
3,239,803 - -1.5
3,239,803 - +0.1
3,239,865 + -0.8
3,239,925 + +2.1
3,239,925 + -0.3
3,240,026 + Psyr_2668 0.16 -0.3
3,240,027 - Psyr_2668 0.16 -1.0
3,240,027 - Psyr_2668 0.16 -1.5
3,240,030 + Psyr_2668 0.17 +0.3
3,240,030 + Psyr_2668 0.17 +0.3
3,240,030 + Psyr_2668 0.17 -0.8
3,240,030 + Psyr_2668 0.17 -0.8
3,240,030 + Psyr_2668 0.17 -1.8
3,240,030 + Psyr_2668 0.17 +0.4
3,240,031 - Psyr_2668 0.17 -0.5
3,240,536 + -2.1
3,240,536 + -1.1
3,240,536 + +3.3
3,240,536 + -0.4
3,240,537 - -0.3
3,240,537 - +0.1
3,240,537 - -2.8
3,240,540 + +0.8
3,240,540 + -1.4
3,240,540 + -1.0
3,240,540 + -0.1
3,240,540 + -2.6
3,240,620 - -0.0
3,241,067 - Psyr_2669 0.57 +0.0
3,241,139 - Psyr_2669 0.66 +0.5
3,241,189 + Psyr_2669 0.72 +0.2
3,241,247 + +1.3
3,241,248 - Psyr_2669 0.80 +0.3
3,241,329 + Psyr_2669 0.90 -0.9
3,241,329 + Psyr_2669 0.90 -3.0
3,241,330 - Psyr_2669 0.90 +0.1
3,241,330 - Psyr_2669 0.90 -1.5
3,241,338 + +1.5
3,241,338 + -0.1
3,241,338 + +2.0
3,241,339 - +0.4
3,241,339 - +0.3
3,241,339 - -0.2
3,241,339 - -0.7
3,241,339 - +2.0
3,241,379 + -0.3
3,241,379 + +0.5
3,241,379 + +1.9

Or see this region's nucleotide sequence