Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2468

Experiment: KB with Paeonol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2467 and Psyr_2468 overlap by 4 nucleotidesPsyr_2468 and Psyr_2469 are separated by 14 nucleotides Psyr_2467: Psyr_2467 - 3-methylcrotonoyl-CoA carboxylase, alpha subunit, at 2,858,815 to 2,860,764 _2467 Psyr_2468: Psyr_2468 - Enoyl-CoA hydratase/isomerase, at 2,860,761 to 2,861,636 _2468 Psyr_2469: Psyr_2469 - Propionyl-CoA carboxylase, at 2,861,651 to 2,863,258 _2469 Position (kb) 2860 2861 2862Strain fitness (log2 ratio) -2 -1 0 1 2at 2859.848 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.849 kb on - strand, within Psyr_2467at 2859.868 kb on + strand, within Psyr_2467at 2859.869 kb on - strand, within Psyr_2467at 2859.951 kb on - strand, within Psyr_2467at 2860.085 kb on + strand, within Psyr_2467at 2860.085 kb on + strand, within Psyr_2467at 2860.148 kb on + strand, within Psyr_2467at 2860.149 kb on - strand, within Psyr_2467at 2860.149 kb on - strand, within Psyr_2467at 2860.574 kb on + strandat 2860.574 kb on + strandat 2860.575 kb on - strandat 2860.575 kb on - strandat 2860.630 kb on - strandat 2861.141 kb on - strand, within Psyr_2468at 2861.347 kb on + strand, within Psyr_2468at 2861.347 kb on + strand, within Psyr_2468at 2861.347 kb on + strand, within Psyr_2468at 2861.348 kb on - strand, within Psyr_2468at 2861.392 kb on + strand, within Psyr_2468at 2861.393 kb on - strand, within Psyr_2468at 2861.393 kb on - strand, within Psyr_2468at 2861.497 kb on - strand, within Psyr_2468at 2861.497 kb on - strand, within Psyr_2468at 2861.611 kb on - strandat 2861.678 kb on - strandat 2861.784 kb on + strandat 2861.805 kb on + strandat 2861.957 kb on + strand, within Psyr_2469at 2861.958 kb on - strand, within Psyr_2469at 2861.994 kb on + strand, within Psyr_2469at 2862.105 kb on + strand, within Psyr_2469at 2862.105 kb on + strand, within Psyr_2469at 2862.105 kb on + strand, within Psyr_2469at 2862.106 kb on - strand, within Psyr_2469at 2862.106 kb on - strand, within Psyr_2469at 2862.350 kb on + strand, within Psyr_2469at 2862.351 kb on - strand, within Psyr_2469at 2862.351 kb on - strand, within Psyr_2469at 2862.516 kb on + strand, within Psyr_2469

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
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2,859,848 + Psyr_2467 0.53 +1.2
2,859,848 + Psyr_2467 0.53 +1.2
2,859,848 + Psyr_2467 0.53 +1.2
2,859,848 + Psyr_2467 0.53 +0.1
2,859,849 - Psyr_2467 0.53 -1.8
2,859,868 + Psyr_2467 0.54 -1.4
2,859,869 - Psyr_2467 0.54 -1.2
2,859,951 - Psyr_2467 0.58 -0.3
2,860,085 + Psyr_2467 0.65 -1.2
2,860,085 + Psyr_2467 0.65 +0.8
2,860,148 + Psyr_2467 0.68 -1.5
2,860,149 - Psyr_2467 0.68 -0.6
2,860,149 - Psyr_2467 0.68 +0.2
2,860,574 + +1.5
2,860,574 + +2.7
2,860,575 - +0.3
2,860,575 - +1.2
2,860,630 - -1.8
2,861,141 - Psyr_2468 0.43 -1.0
2,861,347 + Psyr_2468 0.67 -0.6
2,861,347 + Psyr_2468 0.67 +0.4
2,861,347 + Psyr_2468 0.67 -0.6
2,861,348 - Psyr_2468 0.67 -1.6
2,861,392 + Psyr_2468 0.72 -1.8
2,861,393 - Psyr_2468 0.72 -0.3
2,861,393 - Psyr_2468 0.72 -0.4
2,861,497 - Psyr_2468 0.84 -1.4
2,861,497 - Psyr_2468 0.84 -1.7
2,861,611 - +2.7
2,861,678 - +0.4
2,861,784 + +0.4
2,861,805 + +0.9
2,861,957 + Psyr_2469 0.19 +0.0
2,861,958 - Psyr_2469 0.19 +1.4
2,861,994 + Psyr_2469 0.21 +0.4
2,862,105 + Psyr_2469 0.28 -0.0
2,862,105 + Psyr_2469 0.28 +0.8
2,862,105 + Psyr_2469 0.28 +1.0
2,862,106 - Psyr_2469 0.28 +0.4
2,862,106 - Psyr_2469 0.28 -2.4
2,862,350 + Psyr_2469 0.43 +1.0
2,862,351 - Psyr_2469 0.44 -0.1
2,862,351 - Psyr_2469 0.44 +2.7
2,862,516 + Psyr_2469 0.54 -1.3

Or see this region's nucleotide sequence