Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2334

Experiment: KB with Paeonol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2332 and Psyr_2333 are separated by 16 nucleotidesPsyr_2333 and Psyr_2334 are separated by 3 nucleotidesPsyr_2334 and Psyr_2335 overlap by 4 nucleotides Psyr_2332: Psyr_2332 - conserved hypothetical protein, at 2,710,493 to 2,710,783 _2332 Psyr_2333: Psyr_2333 - Binding-protein-dependent transport systems inner membrane component, at 2,710,800 to 2,711,594 _2333 Psyr_2334: Psyr_2334 - Binding-protein-dependent transport systems inner membrane component, at 2,711,598 to 2,712,470 _2334 Psyr_2335: Psyr_2335 - ABC transporter, at 2,712,467 to 2,713,495 _2335 Position (kb) 2711 2712 2713Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2710.733 kb on - strand, within Psyr_2332at 2710.819 kb on - strandat 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2711.160 kb on + strand, within Psyr_2333at 2711.160 kb on + strand, within Psyr_2333at 2711.160 kb on + strand, within Psyr_2333at 2711.161 kb on - strand, within Psyr_2333at 2711.161 kb on - strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.407 kb on + strand, within Psyr_2333at 2711.408 kb on - strand, within Psyr_2333at 2711.408 kb on - strand, within Psyr_2333at 2711.725 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.735 kb on - strand, within Psyr_2334at 2712.013 kb on + strand, within Psyr_2334at 2712.013 kb on + strand, within Psyr_2334at 2712.014 kb on - strand, within Psyr_2334at 2712.187 kb on + strand, within Psyr_2334at 2712.187 kb on + strand, within Psyr_2334at 2712.187 kb on + strand, within Psyr_2334at 2712.188 kb on - strand, within Psyr_2334at 2712.188 kb on - strand, within Psyr_2334at 2712.271 kb on + strand, within Psyr_2334at 2712.271 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.310 kb on + strand, within Psyr_2334at 2712.310 kb on + strand, within Psyr_2334at 2712.311 kb on - strand, within Psyr_2334at 2712.311 kb on - strand, within Psyr_2334at 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.572 kb on + strand, within Psyr_2335at 2712.572 kb on + strand, within Psyr_2335at 2712.572 kb on + strand, within Psyr_2335at 2712.572 kb on + strand, within Psyr_2335at 2712.573 kb on - strand, within Psyr_2335at 2712.573 kb on - strand, within Psyr_2335at 2712.573 kb on - strand, within Psyr_2335at 2712.575 kb on + strand, within Psyr_2335at 2712.575 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.940 kb on + strand, within Psyr_2335at 2713.246 kb on - strand, within Psyr_2335at 2713.246 kb on - strand, within Psyr_2335at 2713.246 kb on - strand, within Psyr_2335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
remove
2,710,733 - Psyr_2332 0.82 -0.2
2,710,819 - -1.2
2,710,933 + Psyr_2333 0.17 -1.2
2,710,933 + Psyr_2333 0.17 +2.7
2,710,933 + Psyr_2333 0.17 -1.3
2,710,933 + Psyr_2333 0.17 +0.5
2,710,933 + Psyr_2333 0.17 +0.4
2,710,933 + Psyr_2333 0.17 -0.9
2,710,933 + Psyr_2333 0.17 -0.7
2,710,933 + Psyr_2333 0.17 +0.7
2,710,933 + Psyr_2333 0.17 -0.3
2,710,933 + Psyr_2333 0.17 -0.1
2,710,933 + Psyr_2333 0.17 -0.2
2,710,933 + Psyr_2333 0.17 -1.0
2,710,933 + Psyr_2333 0.17 +4.1
2,710,933 + Psyr_2333 0.17 -1.6
2,710,933 + Psyr_2333 0.17 -0.1
2,710,933 + Psyr_2333 0.17 +0.6
2,710,933 + Psyr_2333 0.17 -1.2
2,710,933 + Psyr_2333 0.17 -1.1
2,710,933 + Psyr_2333 0.17 -1.2
2,710,933 + Psyr_2333 0.17 -1.9
2,710,933 + Psyr_2333 0.17 -0.1
2,710,933 + Psyr_2333 0.17 +0.1
2,710,933 + Psyr_2333 0.17 +0.0
2,710,933 + Psyr_2333 0.17 -0.4
2,710,933 + Psyr_2333 0.17 -0.8
2,710,933 + Psyr_2333 0.17 -0.4
2,710,933 + Psyr_2333 0.17 -0.5
2,710,933 + Psyr_2333 0.17 +0.2
2,710,933 + Psyr_2333 0.17 -0.6
2,710,933 + Psyr_2333 0.17 +0.1
2,710,933 + Psyr_2333 0.17 -2.3
2,710,933 + Psyr_2333 0.17 +1.7
2,710,934 - Psyr_2333 0.17 -1.1
2,710,934 - Psyr_2333 0.17 +1.1
2,710,934 - Psyr_2333 0.17 -1.7
2,710,934 - Psyr_2333 0.17 +0.8
2,710,934 - Psyr_2333 0.17 +0.5
2,710,934 - Psyr_2333 0.17 +0.7
2,710,934 - Psyr_2333 0.17 -0.4
2,710,934 - Psyr_2333 0.17 +0.7
2,710,934 - Psyr_2333 0.17 -0.2
2,710,934 - Psyr_2333 0.17 -0.2
2,710,934 - Psyr_2333 0.17 -1.9
2,710,934 - Psyr_2333 0.17 -1.3
2,710,934 - Psyr_2333 0.17 -0.1
2,710,934 - Psyr_2333 0.17 -1.6
2,710,934 - Psyr_2333 0.17 -0.5
2,710,934 - Psyr_2333 0.17 -0.0
2,710,934 - Psyr_2333 0.17 -1.8
2,710,934 - Psyr_2333 0.17 +2.1
2,710,934 - Psyr_2333 0.17 +0.1
2,710,934 - Psyr_2333 0.17 -1.7
2,710,934 - Psyr_2333 0.17 -0.7
2,710,934 - Psyr_2333 0.17 +0.5
2,710,934 - Psyr_2333 0.17 +0.4
2,710,934 - Psyr_2333 0.17 -0.7
2,710,934 - Psyr_2333 0.17 +0.6
2,710,934 - Psyr_2333 0.17 +0.8
2,710,934 - Psyr_2333 0.17 +0.4
2,711,160 + Psyr_2333 0.45 -0.3
2,711,160 + Psyr_2333 0.45 -0.2
2,711,160 + Psyr_2333 0.45 +0.7
2,711,161 - Psyr_2333 0.45 -0.0
2,711,161 - Psyr_2333 0.45 +0.7
2,711,324 + Psyr_2333 0.66 -0.8
2,711,324 + Psyr_2333 0.66 -0.8
2,711,324 + Psyr_2333 0.66 -2.7
2,711,324 + Psyr_2333 0.66 +1.5
2,711,325 - Psyr_2333 0.66 -0.2
2,711,325 - Psyr_2333 0.66 -1.0
2,711,325 - Psyr_2333 0.66 +3.7
2,711,325 - Psyr_2333 0.66 +1.0
2,711,325 - Psyr_2333 0.66 -1.7
2,711,325 - Psyr_2333 0.66 -1.5
2,711,325 - Psyr_2333 0.66 +0.1
2,711,407 + Psyr_2333 0.76 +0.5
2,711,408 - Psyr_2333 0.76 -0.5
2,711,408 - Psyr_2333 0.76 -0.3
2,711,725 + Psyr_2334 0.15 +0.3
2,711,734 + Psyr_2334 0.16 +2.1
2,711,734 + Psyr_2334 0.16 +1.4
2,711,734 + Psyr_2334 0.16 -0.3
2,711,734 + Psyr_2334 0.16 -1.2
2,711,735 - Psyr_2334 0.16 +1.7
2,712,013 + Psyr_2334 0.48 -1.3
2,712,013 + Psyr_2334 0.48 +0.2
2,712,014 - Psyr_2334 0.48 +3.7
2,712,187 + Psyr_2334 0.67 +1.0
2,712,187 + Psyr_2334 0.67 +0.3
2,712,187 + Psyr_2334 0.67 +1.5
2,712,188 - Psyr_2334 0.68 +1.5
2,712,188 - Psyr_2334 0.68 +1.1
2,712,271 + Psyr_2334 0.77 +0.4
2,712,271 + Psyr_2334 0.77 -0.6
2,712,295 + Psyr_2334 0.80 -0.9
2,712,295 + Psyr_2334 0.80 +1.3
2,712,295 + Psyr_2334 0.80 +0.5
2,712,295 + Psyr_2334 0.80 -0.4
2,712,295 + Psyr_2334 0.80 -1.1
2,712,295 + Psyr_2334 0.80 +1.1
2,712,295 + Psyr_2334 0.80 +2.0
2,712,295 + Psyr_2334 0.80 -2.3
2,712,295 + Psyr_2334 0.80 -0.2
2,712,295 + Psyr_2334 0.80 +0.1
2,712,295 + Psyr_2334 0.80 +1.0
2,712,296 - Psyr_2334 0.80 -0.9
2,712,296 - Psyr_2334 0.80 +2.5
2,712,296 - Psyr_2334 0.80 +2.1
2,712,296 - Psyr_2334 0.80 +0.6
2,712,296 - Psyr_2334 0.80 +0.1
2,712,296 - Psyr_2334 0.80 +0.9
2,712,310 + Psyr_2334 0.82 +1.3
2,712,310 + Psyr_2334 0.82 -1.5
2,712,311 - Psyr_2334 0.82 -1.3
2,712,311 - Psyr_2334 0.82 +1.3
2,712,400 + +0.8
2,712,400 + -0.2
2,712,400 + -1.2
2,712,400 + +0.5
2,712,400 + -0.9
2,712,400 + -0.5
2,712,400 + +1.4
2,712,400 + +1.5
2,712,400 + -0.6
2,712,401 - +0.1
2,712,401 - -1.1
2,712,401 - +1.1
2,712,401 - +0.5
2,712,401 - -1.7
2,712,401 - -0.8
2,712,401 - +2.9
2,712,401 - +0.4
2,712,401 - +3.7
2,712,401 - -1.2
2,712,572 + Psyr_2335 0.10 +0.7
2,712,572 + Psyr_2335 0.10 -0.7
2,712,572 + Psyr_2335 0.10 -0.3
2,712,572 + Psyr_2335 0.10 -0.2
2,712,573 - Psyr_2335 0.10 +0.4
2,712,573 - Psyr_2335 0.10 +0.4
2,712,573 - Psyr_2335 0.10 -0.1
2,712,575 + Psyr_2335 0.10 +1.1
2,712,575 + Psyr_2335 0.10 -1.8
2,712,840 + Psyr_2335 0.36 +1.1
2,712,840 + Psyr_2335 0.36 -3.1
2,712,840 + Psyr_2335 0.36 -0.0
2,712,840 + Psyr_2335 0.36 -1.0
2,712,840 + Psyr_2335 0.36 -1.7
2,712,840 + Psyr_2335 0.36 +0.1
2,712,840 + Psyr_2335 0.36 +0.1
2,712,840 + Psyr_2335 0.36 +0.4
2,712,841 - Psyr_2335 0.36 -0.5
2,712,841 - Psyr_2335 0.36 +0.2
2,712,841 - Psyr_2335 0.36 +0.5
2,712,841 - Psyr_2335 0.36 +1.5
2,712,940 + Psyr_2335 0.46 -0.5
2,713,246 - Psyr_2335 0.76 +0.3
2,713,246 - Psyr_2335 0.76 -1.5
2,713,246 - Psyr_2335 0.76 +1.9

Or see this region's nucleotide sequence