Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2309

Experiment: KB with Paeonol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2306 and Psyr_2307 are separated by 6 nucleotidesPsyr_2307 and Psyr_2308 are separated by 129 nucleotidesPsyr_2308 and Psyr_2309 are separated by 63 nucleotidesPsyr_2309 and Psyr_2310 are separated by 291 nucleotidesPsyr_2310 and Psyr_2311 are separated by 97 nucleotides Psyr_2306: Psyr_2306 - General substrate transporter:Major facilitator superfamily, at 2,681,686 to 2,683,137 _2306 Psyr_2307: Psyr_2307 - conserved hypothetical protein, at 2,683,144 to 2,683,365 _2307 Psyr_2308: Psyr_2308 - conserved hypothetical protein, at 2,683,495 to 2,683,698 _2308 Psyr_2309: Psyr_2309 - conserved hypothetical protein, at 2,683,762 to 2,684,304 _2309 Psyr_2310: Psyr_2310 - lipoprotein, putative, at 2,684,596 to 2,684,904 _2310 Psyr_2311: Psyr_2311 - conserved hypothetical protein, at 2,685,002 to 2,685,859 _2311 Position (kb) 2683 2684 2685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2682.862 kb on + strand, within Psyr_2306at 2682.863 kb on - strand, within Psyr_2306at 2682.923 kb on - strand, within Psyr_2306at 2683.244 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.307 kb on + strand, within Psyr_2307at 2683.308 kb on - strand, within Psyr_2307at 2683.308 kb on - strand, within Psyr_2307at 2683.308 kb on - strand, within Psyr_2307at 2683.308 kb on - strand, within Psyr_2307at 2683.308 kb on - strand, within Psyr_2307at 2683.308 kb on - strand, within Psyr_2307at 2683.356 kb on + strandat 2683.356 kb on + strandat 2683.356 kb on + strandat 2683.356 kb on + strandat 2683.356 kb on + strandat 2683.356 kb on + strandat 2683.356 kb on + strandat 2683.357 kb on - strandat 2683.357 kb on - strandat 2683.357 kb on - strandat 2683.357 kb on - strandat 2683.357 kb on - strandat 2683.357 kb on - strandat 2683.376 kb on + strandat 2683.377 kb on - strandat 2683.392 kb on + strandat 2683.392 kb on + strandat 2683.392 kb on + strandat 2683.393 kb on - strandat 2683.395 kb on + strandat 2683.453 kb on + strandat 2683.457 kb on + strandat 2683.457 kb on + strandat 2683.458 kb on - strandat 2683.458 kb on - strandat 2683.497 kb on - strandat 2683.675 kb on - strand, within Psyr_2308at 2683.692 kb on + strandat 2683.692 kb on + strandat 2683.692 kb on + strandat 2683.692 kb on + strandat 2683.693 kb on - strandat 2683.928 kb on + strand, within Psyr_2309at 2683.928 kb on + strand, within Psyr_2309at 2683.928 kb on + strand, within Psyr_2309at 2683.929 kb on - strand, within Psyr_2309at 2683.929 kb on - strand, within Psyr_2309at 2683.929 kb on - strand, within Psyr_2309at 2683.929 kb on - strand, within Psyr_2309at 2683.929 kb on - strand, within Psyr_2309at 2684.102 kb on + strand, within Psyr_2309at 2684.112 kb on + strand, within Psyr_2309at 2684.129 kb on + strand, within Psyr_2309at 2684.150 kb on + strand, within Psyr_2309at 2684.150 kb on + strand, within Psyr_2309at 2684.284 kb on + strandat 2684.284 kb on + strandat 2684.285 kb on - strandat 2684.285 kb on - strandat 2684.309 kb on - strandat 2684.367 kb on - strandat 2684.416 kb on + strandat 2684.417 kb on - strandat 2684.597 kb on + strandat 2684.598 kb on - strandat 2684.654 kb on + strand, within Psyr_2310at 2684.654 kb on + strand, within Psyr_2310at 2684.654 kb on + strand, within Psyr_2310at 2684.654 kb on + strand, within Psyr_2310at 2684.655 kb on - strand, within Psyr_2310at 2684.655 kb on - strand, within Psyr_2310at 2684.655 kb on - strand, within Psyr_2310at 2684.655 kb on - strand, within Psyr_2310at 2684.770 kb on + strand, within Psyr_2310at 2684.771 kb on - strand, within Psyr_2310at 2684.898 kb on + strandat 2684.899 kb on - strandat 2684.926 kb on + strandat 2684.927 kb on - strandat 2684.927 kb on - strandat 2684.929 kb on - strandat 2684.929 kb on - strandat 2684.954 kb on + strandat 2684.955 kb on - strandat 2685.202 kb on - strand, within Psyr_2311at 2685.202 kb on - strand, within Psyr_2311at 2685.202 kb on - strand, within Psyr_2311at 2685.259 kb on - strand, within Psyr_2311at 2685.283 kb on - strand, within Psyr_2311

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
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2,682,862 + Psyr_2306 0.81 -1.2
2,682,863 - Psyr_2306 0.81 +1.1
2,682,923 - Psyr_2306 0.85 +0.4
2,683,244 + Psyr_2307 0.45 -0.3
2,683,307 + Psyr_2307 0.73 -1.2
2,683,307 + Psyr_2307 0.73 -0.9
2,683,307 + Psyr_2307 0.73 +0.5
2,683,307 + Psyr_2307 0.73 +3.7
2,683,307 + Psyr_2307 0.73 -0.2
2,683,307 + Psyr_2307 0.73 -0.1
2,683,307 + Psyr_2307 0.73 +0.5
2,683,307 + Psyr_2307 0.73 -0.1
2,683,307 + Psyr_2307 0.73 -0.9
2,683,308 - Psyr_2307 0.74 -0.6
2,683,308 - Psyr_2307 0.74 -1.0
2,683,308 - Psyr_2307 0.74 -0.3
2,683,308 - Psyr_2307 0.74 +0.5
2,683,308 - Psyr_2307 0.74 +0.3
2,683,308 - Psyr_2307 0.74 -0.8
2,683,356 + -0.2
2,683,356 + -1.0
2,683,356 + -1.1
2,683,356 + -1.9
2,683,356 + -0.0
2,683,356 + +2.1
2,683,356 + -0.7
2,683,357 - -0.6
2,683,357 - -0.1
2,683,357 - +2.1
2,683,357 - +0.4
2,683,357 - -0.9
2,683,357 - +0.2
2,683,376 + -0.3
2,683,377 - +0.5
2,683,392 + -0.9
2,683,392 + +0.5
2,683,392 + +0.1
2,683,393 - -0.2
2,683,395 + -0.3
2,683,453 + +0.1
2,683,457 + -0.3
2,683,457 + +0.1
2,683,458 - +0.2
2,683,458 - -1.4
2,683,497 - -2.3
2,683,675 - Psyr_2308 0.88 -0.4
2,683,692 + -0.3
2,683,692 + +1.7
2,683,692 + +0.3
2,683,692 + +0.2
2,683,693 - +1.1
2,683,928 + Psyr_2309 0.31 -0.3
2,683,928 + Psyr_2309 0.31 -0.9
2,683,928 + Psyr_2309 0.31 -1.3
2,683,929 - Psyr_2309 0.31 -1.8
2,683,929 - Psyr_2309 0.31 -0.2
2,683,929 - Psyr_2309 0.31 -2.8
2,683,929 - Psyr_2309 0.31 -0.7
2,683,929 - Psyr_2309 0.31 -2.5
2,684,102 + Psyr_2309 0.63 +3.1
2,684,112 + Psyr_2309 0.64 -1.7
2,684,129 + Psyr_2309 0.68 -0.8
2,684,150 + Psyr_2309 0.71 -0.1
2,684,150 + Psyr_2309 0.71 +0.8
2,684,284 + +0.1
2,684,284 + -0.0
2,684,285 - -0.9
2,684,285 - -0.1
2,684,309 - -0.3
2,684,367 - +0.1
2,684,416 + -0.0
2,684,417 - -1.3
2,684,597 + +3.1
2,684,598 - +0.5
2,684,654 + Psyr_2310 0.19 -0.9
2,684,654 + Psyr_2310 0.19 -1.2
2,684,654 + Psyr_2310 0.19 +0.7
2,684,654 + Psyr_2310 0.19 -1.4
2,684,655 - Psyr_2310 0.19 +0.1
2,684,655 - Psyr_2310 0.19 -0.1
2,684,655 - Psyr_2310 0.19 +0.8
2,684,655 - Psyr_2310 0.19 +1.1
2,684,770 + Psyr_2310 0.56 +0.8
2,684,771 - Psyr_2310 0.57 +2.4
2,684,898 + -0.2
2,684,899 - -1.3
2,684,926 + +1.6
2,684,927 - +0.5
2,684,927 - +0.8
2,684,929 - -0.0
2,684,929 - +1.0
2,684,954 + -1.5
2,684,955 - -0.1
2,685,202 - Psyr_2311 0.23 -0.4
2,685,202 - Psyr_2311 0.23 +2.7
2,685,202 - Psyr_2311 0.23 -1.7
2,685,259 - Psyr_2311 0.30 -0.4
2,685,283 - Psyr_2311 0.33 +0.2

Or see this region's nucleotide sequence