Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1742

Experiment: KB with Paeonol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1740 and Psyr_1741 are separated by 12 nucleotidesPsyr_1741 and Psyr_1742 are separated by 84 nucleotidesPsyr_1742 and Psyr_1743 are separated by 64 nucleotides Psyr_1740: Psyr_1740 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 1,977,203 to 1,978,003 _1740 Psyr_1741: Psyr_1741 - conserved hypothetical protein, at 1,978,016 to 1,978,288 _1741 Psyr_1742: Psyr_1742 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 1,978,373 to 1,980,145 _1742 Psyr_1743: Psyr_1743 - methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+), at 1,980,210 to 1,981,064 _1743 Position (kb) 1978 1979 1980 1981Strain fitness (log2 ratio) -2 -1 0 1 2at 1977.405 kb on - strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.408 kb on - strand, within Psyr_1740at 1977.408 kb on - strand, within Psyr_1740at 1977.566 kb on + strand, within Psyr_1740at 1977.567 kb on - strand, within Psyr_1740at 1977.567 kb on - strand, within Psyr_1740at 1977.583 kb on - strand, within Psyr_1740at 1977.583 kb on - strand, within Psyr_1740at 1977.698 kb on + strand, within Psyr_1740at 1977.698 kb on + strand, within Psyr_1740at 1977.698 kb on + strand, within Psyr_1740at 1977.699 kb on - strand, within Psyr_1740at 1977.699 kb on - strand, within Psyr_1740at 1978.190 kb on + strand, within Psyr_1741at 1978.287 kb on - strandat 1978.347 kb on + strandat 1978.347 kb on + strandat 1978.347 kb on + strandat 1978.348 kb on - strandat 1978.372 kb on + strandat 1978.372 kb on + strandat 1978.373 kb on - strandat 1978.373 kb on - strandat 1978.373 kb on - strandat 1978.402 kb on + strandat 1978.402 kb on + strandat 1978.403 kb on - strandat 1978.403 kb on - strandat 1978.403 kb on - strandat 1978.467 kb on - strandat 1978.625 kb on + strand, within Psyr_1742at 1978.626 kb on - strand, within Psyr_1742at 1978.752 kb on - strand, within Psyr_1742at 1978.901 kb on - strand, within Psyr_1742at 1978.925 kb on + strand, within Psyr_1742at 1978.926 kb on - strand, within Psyr_1742at 1979.018 kb on + strand, within Psyr_1742at 1979.018 kb on + strand, within Psyr_1742at 1979.018 kb on + strand, within Psyr_1742at 1979.019 kb on - strand, within Psyr_1742at 1979.019 kb on - strand, within Psyr_1742at 1979.019 kb on - strand, within Psyr_1742at 1979.058 kb on - strand, within Psyr_1742at 1979.132 kb on + strand, within Psyr_1742at 1979.333 kb on + strand, within Psyr_1742at 1979.334 kb on - strand, within Psyr_1742at 1979.334 kb on - strand, within Psyr_1742at 1979.334 kb on - strand, within Psyr_1742at 1979.334 kb on - strand, within Psyr_1742at 1979.355 kb on - strand, within Psyr_1742at 1979.441 kb on + strand, within Psyr_1742at 1979.441 kb on + strand, within Psyr_1742at 1979.636 kb on + strand, within Psyr_1742at 1979.636 kb on + strand, within Psyr_1742at 1979.637 kb on - strand, within Psyr_1742at 1979.637 kb on - strand, within Psyr_1742at 1979.772 kb on - strand, within Psyr_1742at 1979.992 kb on + strandat 1979.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
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1,977,405 - Psyr_1740 0.25 +0.1
1,977,407 + Psyr_1740 0.25 +0.6
1,977,407 + Psyr_1740 0.25 -0.7
1,977,407 + Psyr_1740 0.25 -0.9
1,977,407 + Psyr_1740 0.25 +0.1
1,977,407 + Psyr_1740 0.25 +1.6
1,977,408 - Psyr_1740 0.26 -0.5
1,977,408 - Psyr_1740 0.26 +0.4
1,977,566 + Psyr_1740 0.45 -0.4
1,977,567 - Psyr_1740 0.45 +1.5
1,977,567 - Psyr_1740 0.45 +0.8
1,977,583 - Psyr_1740 0.47 -0.6
1,977,583 - Psyr_1740 0.47 +0.8
1,977,698 + Psyr_1740 0.62 +0.3
1,977,698 + Psyr_1740 0.62 -1.5
1,977,698 + Psyr_1740 0.62 -2.4
1,977,699 - Psyr_1740 0.62 +1.8
1,977,699 - Psyr_1740 0.62 +1.8
1,978,190 + Psyr_1741 0.64 +1.2
1,978,287 - +1.7
1,978,347 + -0.1
1,978,347 + +0.5
1,978,347 + +1.2
1,978,348 - -1.2
1,978,372 + -1.4
1,978,372 + +2.6
1,978,373 - -0.1
1,978,373 - -0.7
1,978,373 - -0.5
1,978,402 + +0.3
1,978,402 + +0.3
1,978,403 - +0.3
1,978,403 - -0.1
1,978,403 - -0.2
1,978,467 - -0.1
1,978,625 + Psyr_1742 0.14 +1.1
1,978,626 - Psyr_1742 0.14 +2.1
1,978,752 - Psyr_1742 0.21 +2.1
1,978,901 - Psyr_1742 0.30 +0.2
1,978,925 + Psyr_1742 0.31 +0.6
1,978,926 - Psyr_1742 0.31 +0.7
1,979,018 + Psyr_1742 0.36 +1.4
1,979,018 + Psyr_1742 0.36 +1.6
1,979,018 + Psyr_1742 0.36 -0.4
1,979,019 - Psyr_1742 0.36 -0.6
1,979,019 - Psyr_1742 0.36 +1.1
1,979,019 - Psyr_1742 0.36 -1.8
1,979,058 - Psyr_1742 0.39 -0.4
1,979,132 + Psyr_1742 0.43 +0.4
1,979,333 + Psyr_1742 0.54 -0.3
1,979,334 - Psyr_1742 0.54 +1.9
1,979,334 - Psyr_1742 0.54 -0.1
1,979,334 - Psyr_1742 0.54 +0.8
1,979,334 - Psyr_1742 0.54 +1.3
1,979,355 - Psyr_1742 0.55 +0.1
1,979,441 + Psyr_1742 0.60 -0.1
1,979,441 + Psyr_1742 0.60 -0.5
1,979,636 + Psyr_1742 0.71 -0.2
1,979,636 + Psyr_1742 0.71 -0.8
1,979,637 - Psyr_1742 0.71 +2.5
1,979,637 - Psyr_1742 0.71 +0.1
1,979,772 - Psyr_1742 0.79 -0.3
1,979,992 + +1.9
1,979,993 - +0.1

Or see this region's nucleotide sequence