Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1332

Experiment: KB with Paeonol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1331 and Psyr_1332 are separated by 99 nucleotidesPsyr_1332 and Psyr_1333 are separated by 301 nucleotides Psyr_1331: Psyr_1331 - succinyldiaminopimelate desuccinylase, at 1,508,611 to 1,509,762 _1331 Psyr_1332: Psyr_1332 - Glycosyl transferase, family 2, at 1,509,862 to 1,512,357 _1332 Psyr_1333: Psyr_1333 - UBA/THIF-type NAD/FAD binding fold protein, at 1,512,659 to 1,513,489 _1333 Position (kb) 1509 1510 1511 1512 1513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1509.765 kb on - strandat 1509.765 kb on - strandat 1509.765 kb on - strandat 1509.812 kb on - strandat 1509.858 kb on + strandat 1509.858 kb on + strandat 1509.859 kb on - strandat 1509.906 kb on + strandat 1509.906 kb on + strandat 1509.907 kb on - strandat 1509.907 kb on - strandat 1509.907 kb on - strandat 1509.907 kb on - strandat 1510.038 kb on + strandat 1510.039 kb on - strandat 1510.054 kb on + strandat 1510.055 kb on - strandat 1510.055 kb on - strandat 1510.055 kb on - strandat 1510.055 kb on - strandat 1510.092 kb on + strandat 1510.092 kb on + strandat 1510.092 kb on + strandat 1510.092 kb on + strandat 1510.092 kb on + strandat 1510.092 kb on + strandat 1510.092 kb on + strandat 1510.093 kb on - strandat 1510.093 kb on - strandat 1510.093 kb on - strandat 1510.093 kb on - strandat 1510.093 kb on - strandat 1510.093 kb on - strandat 1510.109 kb on + strandat 1510.110 kb on - strandat 1510.292 kb on - strand, within Psyr_1332at 1510.370 kb on + strand, within Psyr_1332at 1510.370 kb on + strand, within Psyr_1332at 1510.370 kb on + strand, within Psyr_1332at 1510.371 kb on - strand, within Psyr_1332at 1510.371 kb on - strand, within Psyr_1332at 1510.419 kb on - strand, within Psyr_1332at 1510.491 kb on + strand, within Psyr_1332at 1510.491 kb on + strand, within Psyr_1332at 1510.491 kb on + strand, within Psyr_1332at 1510.491 kb on + strand, within Psyr_1332at 1510.492 kb on - strand, within Psyr_1332at 1510.492 kb on - strand, within Psyr_1332at 1510.499 kb on + strand, within Psyr_1332at 1510.499 kb on + strand, within Psyr_1332at 1510.500 kb on - strand, within Psyr_1332at 1510.539 kb on + strand, within Psyr_1332at 1510.539 kb on + strand, within Psyr_1332at 1510.562 kb on + strand, within Psyr_1332at 1510.563 kb on - strand, within Psyr_1332at 1510.605 kb on + strand, within Psyr_1332at 1510.605 kb on + strand, within Psyr_1332at 1510.605 kb on + strand, within Psyr_1332at 1510.605 kb on + strand, within Psyr_1332at 1510.606 kb on - strand, within Psyr_1332at 1510.606 kb on - strand, within Psyr_1332at 1510.606 kb on - strand, within Psyr_1332at 1510.633 kb on + strand, within Psyr_1332at 1510.633 kb on + strand, within Psyr_1332at 1510.634 kb on - strand, within Psyr_1332at 1510.705 kb on - strand, within Psyr_1332at 1510.744 kb on - strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.860 kb on + strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.861 kb on - strand, within Psyr_1332at 1510.890 kb on - strand, within Psyr_1332at 1510.912 kb on + strand, within Psyr_1332at 1510.912 kb on + strand, within Psyr_1332at 1510.912 kb on + strand, within Psyr_1332at 1510.913 kb on - strand, within Psyr_1332at 1510.913 kb on - strand, within Psyr_1332at 1510.933 kb on - strand, within Psyr_1332at 1510.946 kb on + strand, within Psyr_1332at 1510.946 kb on + strand, within Psyr_1332at 1510.946 kb on + strand, within Psyr_1332at 1510.947 kb on - strand, within Psyr_1332at 1510.947 kb on - strand, within Psyr_1332at 1510.947 kb on - strand, within Psyr_1332at 1510.947 kb on - strand, within Psyr_1332at 1510.947 kb on - strand, within Psyr_1332at 1510.947 kb on - strand, within Psyr_1332at 1511.062 kb on - strand, within Psyr_1332at 1511.062 kb on - strand, within Psyr_1332at 1511.153 kb on + strand, within Psyr_1332at 1511.153 kb on + strand, within Psyr_1332at 1511.153 kb on + strand, within Psyr_1332at 1511.154 kb on - strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.276 kb on + strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.277 kb on - strand, within Psyr_1332at 1511.301 kb on + strand, within Psyr_1332at 1511.302 kb on - strand, within Psyr_1332at 1511.346 kb on - strand, within Psyr_1332at 1511.375 kb on + strand, within Psyr_1332at 1511.376 kb on - strand, within Psyr_1332at 1511.376 kb on - strand, within Psyr_1332at 1511.390 kb on - strand, within Psyr_1332at 1511.434 kb on - strand, within Psyr_1332at 1511.443 kb on + strand, within Psyr_1332at 1511.444 kb on - strand, within Psyr_1332at 1511.444 kb on - strand, within Psyr_1332at 1511.529 kb on + strand, within Psyr_1332at 1511.529 kb on + strand, within Psyr_1332at 1511.530 kb on - strand, within Psyr_1332at 1511.530 kb on - strand, within Psyr_1332at 1511.579 kb on - strand, within Psyr_1332at 1511.588 kb on + strand, within Psyr_1332at 1511.588 kb on + strand, within Psyr_1332at 1511.588 kb on + strand, within Psyr_1332at 1511.588 kb on + strand, within Psyr_1332at 1511.589 kb on - strand, within Psyr_1332at 1511.589 kb on - strand, within Psyr_1332at 1511.589 kb on - strand, within Psyr_1332at 1511.633 kb on + strand, within Psyr_1332at 1511.633 kb on + strand, within Psyr_1332at 1511.633 kb on + strand, within Psyr_1332at 1511.633 kb on + strand, within Psyr_1332at 1511.633 kb on + strand, within Psyr_1332at 1511.633 kb on + strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.634 kb on - strand, within Psyr_1332at 1511.710 kb on + strand, within Psyr_1332at 1511.710 kb on + strand, within Psyr_1332at 1511.711 kb on - strand, within Psyr_1332at 1511.711 kb on - strand, within Psyr_1332at 1511.711 kb on - strand, within Psyr_1332at 1511.812 kb on - strand, within Psyr_1332at 1511.924 kb on + strand, within Psyr_1332at 1511.924 kb on + strand, within Psyr_1332at 1512.032 kb on - strand, within Psyr_1332at 1512.032 kb on - strand, within Psyr_1332at 1512.065 kb on - strand, within Psyr_1332at 1512.144 kb on - strandat 1512.151 kb on + strandat 1512.151 kb on + strandat 1512.151 kb on + strandat 1512.152 kb on - strandat 1512.152 kb on - strandat 1512.152 kb on - strandat 1512.152 kb on - strandat 1512.154 kb on - strandat 1512.154 kb on - strandat 1512.154 kb on - strandat 1512.176 kb on - strandat 1512.193 kb on + strandat 1512.194 kb on - strandat 1512.224 kb on + strandat 1512.336 kb on + strandat 1512.454 kb on + strandat 1512.454 kb on + strandat 1512.455 kb on - strandat 1512.521 kb on + strandat 1512.537 kb on + strandat 1512.627 kb on + strandat 1512.629 kb on + strandat 1512.652 kb on - strandat 1512.699 kb on + strandat 1512.699 kb on + strandat 1512.699 kb on + strandat 1512.699 kb on + strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.700 kb on - strandat 1512.701 kb on + strandat 1512.702 kb on - strandat 1512.848 kb on - strand, within Psyr_1333at 1512.880 kb on + strand, within Psyr_1333at 1512.881 kb on - strand, within Psyr_1333at 1513.238 kb on + strand, within Psyr_1333at 1513.238 kb on + strand, within Psyr_1333at 1513.239 kb on - strand, within Psyr_1333at 1513.297 kb on + strand, within Psyr_1333at 1513.297 kb on + strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.298 kb on - strand, within Psyr_1333at 1513.333 kb on - strand, within Psyr_1333

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
remove
1,509,765 - -0.6
1,509,765 - -1.7
1,509,765 - -0.8
1,509,812 - +1.8
1,509,858 + -0.9
1,509,858 + +0.5
1,509,859 - -1.3
1,509,906 + +0.2
1,509,906 + +0.5
1,509,907 - +0.0
1,509,907 - +2.8
1,509,907 - -1.5
1,509,907 - +0.2
1,510,038 + -1.7
1,510,039 - -0.7
1,510,054 + +1.2
1,510,055 - -0.1
1,510,055 - -0.7
1,510,055 - +0.6
1,510,055 - +0.2
1,510,092 + -0.8
1,510,092 + +0.2
1,510,092 + +2.5
1,510,092 + +0.9
1,510,092 + +0.4
1,510,092 + +0.5
1,510,092 + -3.0
1,510,093 - -1.1
1,510,093 - +1.5
1,510,093 - -0.5
1,510,093 - +0.6
1,510,093 - -1.1
1,510,093 - -2.1
1,510,109 + +0.1
1,510,110 - +0.4
1,510,292 - Psyr_1332 0.17 -1.4
1,510,370 + Psyr_1332 0.20 +0.4
1,510,370 + Psyr_1332 0.20 -0.0
1,510,370 + Psyr_1332 0.20 +0.4
1,510,371 - Psyr_1332 0.20 -0.6
1,510,371 - Psyr_1332 0.20 +1.6
1,510,419 - Psyr_1332 0.22 +1.7
1,510,491 + Psyr_1332 0.25 +1.3
1,510,491 + Psyr_1332 0.25 +1.2
1,510,491 + Psyr_1332 0.25 -1.4
1,510,491 + Psyr_1332 0.25 -1.1
1,510,492 - Psyr_1332 0.25 +1.3
1,510,492 - Psyr_1332 0.25 +0.5
1,510,499 + Psyr_1332 0.26 -0.6
1,510,499 + Psyr_1332 0.26 -0.3
1,510,500 - Psyr_1332 0.26 -0.6
1,510,539 + Psyr_1332 0.27 +0.8
1,510,539 + Psyr_1332 0.27 +1.6
1,510,562 + Psyr_1332 0.28 +1.4
1,510,563 - Psyr_1332 0.28 +2.2
1,510,605 + Psyr_1332 0.30 +0.1
1,510,605 + Psyr_1332 0.30 -0.2
1,510,605 + Psyr_1332 0.30 +0.7
1,510,605 + Psyr_1332 0.30 +3.8
1,510,606 - Psyr_1332 0.30 -0.8
1,510,606 - Psyr_1332 0.30 +1.7
1,510,606 - Psyr_1332 0.30 -0.1
1,510,633 + Psyr_1332 0.31 +0.8
1,510,633 + Psyr_1332 0.31 -0.3
1,510,634 - Psyr_1332 0.31 +0.1
1,510,705 - Psyr_1332 0.34 -1.8
1,510,744 - Psyr_1332 0.35 +1.2
1,510,860 + Psyr_1332 0.40 -0.3
1,510,860 + Psyr_1332 0.40 +0.3
1,510,860 + Psyr_1332 0.40 -0.2
1,510,860 + Psyr_1332 0.40 +1.0
1,510,860 + Psyr_1332 0.40 +1.2
1,510,860 + Psyr_1332 0.40 +0.1
1,510,860 + Psyr_1332 0.40 +1.2
1,510,860 + Psyr_1332 0.40 +0.3
1,510,861 - Psyr_1332 0.40 +0.0
1,510,861 - Psyr_1332 0.40 +1.2
1,510,861 - Psyr_1332 0.40 -0.3
1,510,861 - Psyr_1332 0.40 +0.2
1,510,861 - Psyr_1332 0.40 +2.2
1,510,861 - Psyr_1332 0.40 -0.0
1,510,861 - Psyr_1332 0.40 -0.9
1,510,890 - Psyr_1332 0.41 +1.6
1,510,912 + Psyr_1332 0.42 +1.2
1,510,912 + Psyr_1332 0.42 +0.3
1,510,912 + Psyr_1332 0.42 -1.0
1,510,913 - Psyr_1332 0.42 +0.4
1,510,913 - Psyr_1332 0.42 +0.4
1,510,933 - Psyr_1332 0.43 -0.7
1,510,946 + Psyr_1332 0.43 -0.1
1,510,946 + Psyr_1332 0.43 +0.1
1,510,946 + Psyr_1332 0.43 +0.2
1,510,947 - Psyr_1332 0.43 -1.2
1,510,947 - Psyr_1332 0.43 +0.8
1,510,947 - Psyr_1332 0.43 -0.1
1,510,947 - Psyr_1332 0.43 +0.3
1,510,947 - Psyr_1332 0.43 -1.3
1,510,947 - Psyr_1332 0.43 +0.2
1,511,062 - Psyr_1332 0.48 +1.2
1,511,062 - Psyr_1332 0.48 +0.9
1,511,153 + Psyr_1332 0.52 -0.4
1,511,153 + Psyr_1332 0.52 -2.2
1,511,153 + Psyr_1332 0.52 -0.4
1,511,154 - Psyr_1332 0.52 +1.8
1,511,276 + Psyr_1332 0.57 +0.8
1,511,276 + Psyr_1332 0.57 -1.0
1,511,276 + Psyr_1332 0.57 +0.9
1,511,276 + Psyr_1332 0.57 -0.1
1,511,276 + Psyr_1332 0.57 -0.0
1,511,276 + Psyr_1332 0.57 -0.6
1,511,276 + Psyr_1332 0.57 -0.5
1,511,276 + Psyr_1332 0.57 -1.1
1,511,276 + Psyr_1332 0.57 +0.9
1,511,277 - Psyr_1332 0.57 -0.2
1,511,277 - Psyr_1332 0.57 -0.5
1,511,277 - Psyr_1332 0.57 +0.2
1,511,277 - Psyr_1332 0.57 -0.8
1,511,277 - Psyr_1332 0.57 -0.8
1,511,277 - Psyr_1332 0.57 +0.7
1,511,277 - Psyr_1332 0.57 -0.1
1,511,277 - Psyr_1332 0.57 +0.2
1,511,301 + Psyr_1332 0.58 +0.9
1,511,302 - Psyr_1332 0.58 +1.1
1,511,346 - Psyr_1332 0.59 +0.0
1,511,375 + Psyr_1332 0.61 +0.6
1,511,376 - Psyr_1332 0.61 -0.2
1,511,376 - Psyr_1332 0.61 -0.1
1,511,390 - Psyr_1332 0.61 -1.0
1,511,434 - Psyr_1332 0.63 -1.3
1,511,443 + Psyr_1332 0.63 +0.3
1,511,444 - Psyr_1332 0.63 +0.4
1,511,444 - Psyr_1332 0.63 +0.9
1,511,529 + Psyr_1332 0.67 -1.1
1,511,529 + Psyr_1332 0.67 +0.2
1,511,530 - Psyr_1332 0.67 -0.1
1,511,530 - Psyr_1332 0.67 -0.5
1,511,579 - Psyr_1332 0.69 -0.3
1,511,588 + Psyr_1332 0.69 -0.6
1,511,588 + Psyr_1332 0.69 -1.7
1,511,588 + Psyr_1332 0.69 -0.2
1,511,588 + Psyr_1332 0.69 +1.0
1,511,589 - Psyr_1332 0.69 -0.6
1,511,589 - Psyr_1332 0.69 +0.1
1,511,589 - Psyr_1332 0.69 -0.2
1,511,633 + Psyr_1332 0.71 -0.5
1,511,633 + Psyr_1332 0.71 +0.0
1,511,633 + Psyr_1332 0.71 -0.1
1,511,633 + Psyr_1332 0.71 -0.7
1,511,633 + Psyr_1332 0.71 -0.6
1,511,633 + Psyr_1332 0.71 -0.6
1,511,634 - Psyr_1332 0.71 +0.9
1,511,634 - Psyr_1332 0.71 +1.0
1,511,634 - Psyr_1332 0.71 +2.8
1,511,634 - Psyr_1332 0.71 +1.0
1,511,634 - Psyr_1332 0.71 -0.4
1,511,634 - Psyr_1332 0.71 +0.4
1,511,634 - Psyr_1332 0.71 -1.3
1,511,634 - Psyr_1332 0.71 +1.2
1,511,634 - Psyr_1332 0.71 -0.7
1,511,634 - Psyr_1332 0.71 -0.9
1,511,710 + Psyr_1332 0.74 +3.2
1,511,710 + Psyr_1332 0.74 -0.2
1,511,711 - Psyr_1332 0.74 +2.5
1,511,711 - Psyr_1332 0.74 +0.8
1,511,711 - Psyr_1332 0.74 +0.6
1,511,812 - Psyr_1332 0.78 +0.5
1,511,924 + Psyr_1332 0.83 +0.2
1,511,924 + Psyr_1332 0.83 +0.2
1,512,032 - Psyr_1332 0.87 +0.1
1,512,032 - Psyr_1332 0.87 +0.7
1,512,065 - Psyr_1332 0.88 +0.8
1,512,144 - +1.0
1,512,151 + +0.3
1,512,151 + -1.5
1,512,151 + +0.2
1,512,152 - -0.7
1,512,152 - +1.0
1,512,152 - +0.9
1,512,152 - +0.8
1,512,154 - -0.0
1,512,154 - +2.0
1,512,154 - -0.9
1,512,176 - +0.3
1,512,193 + +0.1
1,512,194 - +0.8
1,512,224 + +0.3
1,512,336 + +0.3
1,512,454 + -0.6
1,512,454 + -1.7
1,512,455 - +1.2
1,512,521 + +1.2
1,512,537 + +1.7
1,512,627 + -0.4
1,512,629 + +0.2
1,512,652 - -0.7
1,512,699 + +0.7
1,512,699 + -0.4
1,512,699 + -1.2
1,512,699 + -0.7
1,512,700 - +0.1
1,512,700 - -0.1
1,512,700 - +0.2
1,512,700 - +0.2
1,512,700 - -1.6
1,512,700 - +1.2
1,512,700 - -0.7
1,512,700 - -1.2
1,512,700 - -0.6
1,512,700 - +1.0
1,512,701 + -1.5
1,512,702 - -2.1
1,512,848 - Psyr_1333 0.23 -0.2
1,512,880 + Psyr_1333 0.27 -0.0
1,512,881 - Psyr_1333 0.27 -2.3
1,513,238 + Psyr_1333 0.70 -0.7
1,513,238 + Psyr_1333 0.70 +0.4
1,513,239 - Psyr_1333 0.70 +0.8
1,513,297 + Psyr_1333 0.77 +0.8
1,513,297 + Psyr_1333 0.77 -0.9
1,513,298 - Psyr_1333 0.77 +0.5
1,513,298 - Psyr_1333 0.77 -0.8
1,513,298 - Psyr_1333 0.77 +0.6
1,513,298 - Psyr_1333 0.77 +0.4
1,513,333 - Psyr_1333 0.81 +1.1

Or see this region's nucleotide sequence