Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0844

Experiment: KB with Paeonol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0842 and Psyr_0843 are separated by 17 nucleotidesPsyr_0843 and Psyr_0844 overlap by 1 nucleotidesPsyr_0844 and Psyr_0845 are separated by 11 nucleotidesPsyr_0845 and Psyr_0846 are separated by 397 nucleotides Psyr_0842: Psyr_0842 - Peptidoglycan glycosyltransferase, at 953,935 to 956,256 _0842 Psyr_0843: Psyr_0843 - TPR repeat protein, at 956,274 to 957,017 _0843 Psyr_0844: Psyr_0844 - Protein of unknown function DUF446, at 957,017 to 957,346 _0844 Psyr_0845: Psyr_0845 - conserved hypothetical protein, at 957,358 to 957,774 _0845 Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896 _0846 Position (kb) 957 958Strain fitness (log2 ratio) -2 -1 0 1 2 3at 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.159 kb on - strandat 956.160 kb on + strandat 956.255 kb on - strandat 956.255 kb on - strandat 956.255 kb on - strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.280 kb on - strandat 956.280 kb on - strandat 956.280 kb on - strandat 956.280 kb on - strandat 956.482 kb on + strand, within Psyr_0843at 956.482 kb on + strand, within Psyr_0843at 956.483 kb on - strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.829 kb on + strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 957.030 kb on + strandat 957.031 kb on - strandat 957.031 kb on - strandat 957.060 kb on + strand, within Psyr_0844at 957.060 kb on + strand, within Psyr_0844at 957.061 kb on - strand, within Psyr_0844at 957.061 kb on - strand, within Psyr_0844at 957.266 kb on + strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.360 kb on - strandat 957.369 kb on - strandat 957.369 kb on - strandat 957.710 kb on + strand, within Psyr_0845at 957.711 kb on - strand, within Psyr_0845at 957.711 kb on - strand, within Psyr_0845at 957.711 kb on - strand, within Psyr_0845at 957.809 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.924 kb on + strandat 957.924 kb on + strandat 957.956 kb on - strandat 957.956 kb on - strandat 957.987 kb on + strandat 958.004 kb on + strandat 958.052 kb on + strandat 958.052 kb on + strandat 958.053 kb on - strandat 958.053 kb on - strandat 958.075 kb on + strandat 958.075 kb on + strandat 958.113 kb on - strandat 958.113 kb on - strandat 958.118 kb on + strandat 958.118 kb on + strandat 958.118 kb on + strandat 958.118 kb on + strandat 958.118 kb on + strandat 958.119 kb on - strandat 958.119 kb on - strandat 958.119 kb on - strandat 958.119 kb on - strandat 958.119 kb on - strandat 958.121 kb on + strandat 958.121 kb on + strandat 958.121 kb on + strandat 958.158 kb on + strandat 958.182 kb on + strandat 958.182 kb on + strandat 958.182 kb on + strandat 958.183 kb on - strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.234 kb on + strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.235 kb on - strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.238 kb on + strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.239 kb on - strandat 958.271 kb on + strandat 958.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
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956,158 + -0.1
956,158 + +0.0
956,158 + -0.6
956,158 + -2.1
956,158 + -2.3
956,158 + -0.7
956,159 - +1.2
956,160 + -0.5
956,255 - -0.3
956,255 - -1.6
956,255 - -0.8
956,279 + -1.5
956,279 + -0.0
956,279 + +0.2
956,279 + +0.2
956,279 + -1.1
956,279 + -1.3
956,279 + -0.3
956,279 + -1.0
956,280 - -0.4
956,280 - -0.1
956,280 - -0.8
956,280 - +0.3
956,482 + Psyr_0843 0.28 -1.4
956,482 + Psyr_0843 0.28 +0.8
956,483 - Psyr_0843 0.28 +3.6
956,526 + Psyr_0843 0.34 +2.2
956,526 + Psyr_0843 0.34 +0.8
956,526 + Psyr_0843 0.34 -1.3
956,526 + Psyr_0843 0.34 +0.7
956,526 + Psyr_0843 0.34 +0.6
956,526 + Psyr_0843 0.34 +2.5
956,527 - Psyr_0843 0.34 +0.8
956,527 - Psyr_0843 0.34 -1.0
956,527 - Psyr_0843 0.34 +1.2
956,527 - Psyr_0843 0.34 +1.2
956,631 + Psyr_0843 0.48 +1.2
956,631 + Psyr_0843 0.48 +0.4
956,631 + Psyr_0843 0.48 +0.2
956,631 + Psyr_0843 0.48 -0.7
956,631 + Psyr_0843 0.48 +0.1
956,632 - Psyr_0843 0.48 +1.2
956,632 - Psyr_0843 0.48 +0.3
956,632 - Psyr_0843 0.48 +0.9
956,632 - Psyr_0843 0.48 +1.2
956,632 - Psyr_0843 0.48 +1.1
956,829 + Psyr_0843 0.75 +0.2
956,905 - Psyr_0843 0.85 -0.8
956,905 - Psyr_0843 0.85 +0.5
956,905 - Psyr_0843 0.85 -0.4
956,905 - Psyr_0843 0.85 -0.2
956,905 - Psyr_0843 0.85 +0.6
957,030 + +1.0
957,031 - +0.1
957,031 - +0.5
957,060 + Psyr_0844 0.13 +3.3
957,060 + Psyr_0844 0.13 +0.5
957,061 - Psyr_0844 0.13 -0.1
957,061 - Psyr_0844 0.13 -2.0
957,266 + Psyr_0844 0.75 -1.0
957,267 - Psyr_0844 0.76 -2.6
957,267 - Psyr_0844 0.76 +0.0
957,267 - Psyr_0844 0.76 -1.1
957,267 - Psyr_0844 0.76 -2.0
957,360 - +0.3
957,369 - -1.4
957,369 - +0.2
957,710 + Psyr_0845 0.84 -2.0
957,711 - Psyr_0845 0.85 +0.2
957,711 - Psyr_0845 0.85 +0.6
957,711 - Psyr_0845 0.85 -0.0
957,809 + +0.2
957,814 + -1.0
957,814 + +0.3
957,814 + +1.0
957,814 + -1.6
957,814 + -0.2
957,814 + -0.3
957,814 + -0.6
957,924 + -1.1
957,924 + -0.9
957,956 - -1.6
957,956 - -2.4
957,987 + -0.9
958,004 + -0.9
958,052 + -0.6
958,052 + -0.2
958,053 - -0.8
958,053 - +0.4
958,075 + -0.3
958,075 + +0.2
958,113 - -2.0
958,113 - +1.2
958,118 + +0.0
958,118 + -0.4
958,118 + +0.5
958,118 + -0.1
958,118 + +0.5
958,119 - -0.8
958,119 - -0.4
958,119 - +2.8
958,119 - +0.4
958,119 - +1.5
958,121 + +0.4
958,121 + -0.3
958,121 + +0.5
958,158 + +0.8
958,182 + +0.9
958,182 + +0.9
958,182 + -1.1
958,183 - +1.2
958,234 + +1.0
958,234 + -0.8
958,234 + -1.6
958,234 + -0.9
958,234 + -0.1
958,234 + -0.3
958,234 + +0.0
958,234 + -1.4
958,234 + -0.4
958,235 - +1.2
958,235 - +0.3
958,235 - -1.5
958,235 - -0.6
958,235 - -1.2
958,235 - +0.6
958,235 - -1.1
958,235 - +0.1
958,238 + +3.0
958,238 + +0.6
958,238 + -1.2
958,238 + +1.0
958,238 + -0.2
958,238 + +0.7
958,238 + -0.4
958,238 + +0.5
958,238 + -1.7
958,239 - +1.2
958,239 - +0.7
958,239 - +0.5
958,239 - +1.0
958,239 - +0.1
958,239 - -0.5
958,239 - -1.2
958,239 - -0.9
958,239 - +0.6
958,239 - -0.4
958,239 - -1.6
958,239 - -0.4
958,271 + +1.0
958,272 - -0.4

Or see this region's nucleotide sequence