Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0432

Experiment: KB with Paeonol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0430 and Psyr_0431 overlap by 4 nucleotidesPsyr_0431 and Psyr_0432 are separated by 54 nucleotidesPsyr_0432 and Psyr_0433 overlap by 4 nucleotidesPsyr_0433 and Psyr_0434 overlap by 8 nucleotides Psyr_0430: Psyr_0430 - conserved hypothetical protein, at 470,002 to 470,616 _0430 Psyr_0431: Psyr_0431 - Thioesterase superfamily, at 470,613 to 471,062 _0431 Psyr_0432: Psyr_0432 - conserved hypothetical protein, at 471,117 to 472,064 _0432 Psyr_0433: Psyr_0433 - Glycosyl transferase, family 2, at 472,061 to 472,795 _0433 Psyr_0434: Psyr_0434 - AMP-dependent synthetase and ligase, at 472,788 to 474,479 _0434 Position (kb) 471 472 473Strain fitness (log2 ratio) -2 -1 0 1 2 3at 470.632 kb on - strandat 470.632 kb on - strandat 470.729 kb on + strand, within Psyr_0431at 470.730 kb on - strand, within Psyr_0431at 470.858 kb on - strand, within Psyr_0431at 470.858 kb on - strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.914 kb on + strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.915 kb on - strand, within Psyr_0431at 470.918 kb on + strand, within Psyr_0431at 470.918 kb on + strand, within Psyr_0431at 470.919 kb on - strand, within Psyr_0431at 470.919 kb on - strand, within Psyr_0431at 470.919 kb on - strand, within Psyr_0431at 470.962 kb on + strand, within Psyr_0431at 470.962 kb on + strand, within Psyr_0431at 470.962 kb on + strand, within Psyr_0431at 470.971 kb on + strand, within Psyr_0431at 470.971 kb on + strand, within Psyr_0431at 470.972 kb on - strand, within Psyr_0431at 470.972 kb on - strand, within Psyr_0431at 470.972 kb on - strand, within Psyr_0431at 471.064 kb on + strandat 471.064 kb on + strandat 471.064 kb on + strandat 471.064 kb on + strandat 471.064 kb on + strandat 471.065 kb on - strandat 471.065 kb on - strandat 471.065 kb on - strandat 471.093 kb on + strandat 471.093 kb on + strandat 471.093 kb on + strandat 471.094 kb on - strandat 471.094 kb on - strandat 471.094 kb on - strandat 471.094 kb on - strandat 471.094 kb on - strandat 471.878 kb on - strand, within Psyr_0432at 471.923 kb on - strand, within Psyr_0432at 471.923 kb on - strand, within Psyr_0432at 471.923 kb on - strand, within Psyr_0432at 471.937 kb on + strand, within Psyr_0432at 472.192 kb on - strand, within Psyr_0433at 472.399 kb on - strand, within Psyr_0433at 472.407 kb on + strand, within Psyr_0433at 472.408 kb on - strand, within Psyr_0433at 472.629 kb on + strand, within Psyr_0433at 472.629 kb on + strand, within Psyr_0433at 472.630 kb on - strand, within Psyr_0433at 472.630 kb on - strand, within Psyr_0433at 472.630 kb on - strand, within Psyr_0433at 472.630 kb on - strand, within Psyr_0433at 472.630 kb on - strand, within Psyr_0433at 472.634 kb on - strand, within Psyr_0433at 472.658 kb on + strand, within Psyr_0433at 472.789 kb on + strandat 472.789 kb on + strandat 472.789 kb on + strandat 472.789 kb on + strandat 472.789 kb on + strandat 472.789 kb on + strandat 472.789 kb on + strandat 472.790 kb on - strandat 472.790 kb on - strandat 472.790 kb on - strandat 472.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paeonol 10 mM
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470,632 - +1.7
470,632 - +0.5
470,729 + Psyr_0431 0.26 +1.6
470,730 - Psyr_0431 0.26 +0.6
470,858 - Psyr_0431 0.54 +0.8
470,858 - Psyr_0431 0.54 +0.3
470,914 + Psyr_0431 0.67 -1.1
470,914 + Psyr_0431 0.67 -0.4
470,914 + Psyr_0431 0.67 -2.2
470,914 + Psyr_0431 0.67 +0.0
470,914 + Psyr_0431 0.67 -0.1
470,914 + Psyr_0431 0.67 +0.3
470,914 + Psyr_0431 0.67 -0.9
470,914 + Psyr_0431 0.67 -1.2
470,914 + Psyr_0431 0.67 +0.4
470,914 + Psyr_0431 0.67 +0.4
470,914 + Psyr_0431 0.67 +0.3
470,914 + Psyr_0431 0.67 +0.1
470,914 + Psyr_0431 0.67 -0.2
470,914 + Psyr_0431 0.67 -1.5
470,914 + Psyr_0431 0.67 -1.4
470,914 + Psyr_0431 0.67 +0.3
470,914 + Psyr_0431 0.67 -2.1
470,914 + Psyr_0431 0.67 +0.3
470,914 + Psyr_0431 0.67 +1.1
470,915 - Psyr_0431 0.67 +0.2
470,915 - Psyr_0431 0.67 -0.0
470,915 - Psyr_0431 0.67 -0.6
470,915 - Psyr_0431 0.67 -1.1
470,915 - Psyr_0431 0.67 +0.2
470,915 - Psyr_0431 0.67 +0.0
470,915 - Psyr_0431 0.67 -2.4
470,915 - Psyr_0431 0.67 +1.1
470,915 - Psyr_0431 0.67 +0.9
470,915 - Psyr_0431 0.67 +1.1
470,918 + Psyr_0431 0.68 +0.4
470,918 + Psyr_0431 0.68 -0.1
470,919 - Psyr_0431 0.68 +3.3
470,919 - Psyr_0431 0.68 +0.0
470,919 - Psyr_0431 0.68 +1.0
470,962 + Psyr_0431 0.78 -1.7
470,962 + Psyr_0431 0.78 +0.3
470,962 + Psyr_0431 0.78 +0.2
470,971 + Psyr_0431 0.80 -0.7
470,971 + Psyr_0431 0.80 +0.0
470,972 - Psyr_0431 0.80 +2.3
470,972 - Psyr_0431 0.80 -1.2
470,972 - Psyr_0431 0.80 -0.2
471,064 + -0.1
471,064 + +2.0
471,064 + -0.4
471,064 + -1.9
471,064 + +0.7
471,065 - +2.5
471,065 - -1.4
471,065 - -0.5
471,093 + +0.2
471,093 + +0.0
471,093 + +0.9
471,094 - -0.6
471,094 - -0.3
471,094 - +0.5
471,094 - -0.1
471,094 - +0.1
471,878 - Psyr_0432 0.80 +1.0
471,923 - Psyr_0432 0.85 -0.3
471,923 - Psyr_0432 0.85 +0.7
471,923 - Psyr_0432 0.85 +0.1
471,937 + Psyr_0432 0.86 +1.7
472,192 - Psyr_0433 0.18 -0.9
472,399 - Psyr_0433 0.46 +0.4
472,407 + Psyr_0433 0.47 +0.3
472,408 - Psyr_0433 0.47 -0.6
472,629 + Psyr_0433 0.77 -0.1
472,629 + Psyr_0433 0.77 +0.2
472,630 - Psyr_0433 0.77 -1.0
472,630 - Psyr_0433 0.77 -0.2
472,630 - Psyr_0433 0.77 +0.5
472,630 - Psyr_0433 0.77 +0.5
472,630 - Psyr_0433 0.77 +0.3
472,634 - Psyr_0433 0.78 -1.6
472,658 + Psyr_0433 0.81 -0.7
472,789 + +0.7
472,789 + -1.1
472,789 + +0.2
472,789 + -0.0
472,789 + +1.1
472,789 + -0.1
472,789 + +0.7
472,790 - -0.8
472,790 - -0.7
472,790 - -1.0
472,790 - -0.9

Or see this region's nucleotide sequence