Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32725

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS32720 and AZOBR_RS32725 are separated by 337 nucleotidesAZOBR_RS32725 and AZOBR_RS32730 are separated by 187 nucleotides AZOBR_RS32720: AZOBR_RS32720 - hypothetical protein, at 18,664 to 18,984 _RS32720 AZOBR_RS32725: AZOBR_RS32725 - transposase, at 19,322 to 20,290 _RS32725 AZOBR_RS32730: AZOBR_RS32730 - transposase (fragment), at 20,478 to 20,768 _RS32730 Position (kb) 19 20 21Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 18.325 kb on - strandat 18.325 kb on - strandat 18.325 kb on - strandat 18.903 kb on - strand, within AZOBR_RS32720at 18.915 kb on - strandat 19.211 kb on + strandat 19.212 kb on - strandat 19.287 kb on - strandat 19.316 kb on + strandat 19.316 kb on + strandat 19.316 kb on + strandat 19.316 kb on + strandat 19.317 kb on - strandat 19.397 kb on + strandat 19.940 kb on + strand, within AZOBR_RS32725at 19.940 kb on + strand, within AZOBR_RS32725at 19.941 kb on - strand, within AZOBR_RS32725at 20.120 kb on + strand, within AZOBR_RS32725at 20.139 kb on + strand, within AZOBR_RS32725at 20.139 kb on + strand, within AZOBR_RS32725at 20.140 kb on - strand, within AZOBR_RS32725at 20.317 kb on + strandat 20.338 kb on - strandat 20.451 kb on + strandat 20.451 kb on + strandat 20.451 kb on + strandat 20.451 kb on + strandat 20.452 kb on - strandat 20.452 kb on - strandat 20.452 kb on - strandat 20.452 kb on - strandat 20.452 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.947 kb on - strandat 20.979 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
18,325 - -3.0
18,325 - +1.8
18,325 - -0.4
18,903 - AZOBR_RS32720 0.74 +0.5
18,915 - +2.7
19,211 + -0.5
19,212 - -0.1
19,287 - -0.9
19,316 + -0.5
19,316 + -1.6
19,316 + -2.2
19,316 + +0.9
19,317 - -2.3
19,397 + +0.4
19,940 + AZOBR_RS32725 0.64 +1.6
19,940 + AZOBR_RS32725 0.64 -1.2
19,941 - AZOBR_RS32725 0.64 -3.0
20,120 + AZOBR_RS32725 0.82 +0.8
20,139 + AZOBR_RS32725 0.84 +0.8
20,139 + AZOBR_RS32725 0.84 -0.7
20,140 - AZOBR_RS32725 0.84 +0.9
20,317 + -1.5
20,338 - +0.2
20,451 + +0.6
20,451 + +0.2
20,451 + +1.5
20,451 + -1.5
20,452 - +1.1
20,452 - +1.3
20,452 - +1.7
20,452 - +0.3
20,452 - -0.5
20,744 - -2.5
20,744 - +0.3
20,744 - -1.7
20,744 - +0.9
20,744 - -0.2
20,744 - +2.7
20,947 - +1.7
20,979 + +0.6

Or see this region's nucleotide sequence