Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31455 and AZOBR_RS31460 are separated by 27 nucleotides AZOBR_RS31460 and AZOBR_RS31465 are separated by 110 nucleotides AZOBR_RS31465 and AZOBR_RS31470 are separated by 13 nucleotides
AZOBR_RS31455: AZOBR_RS31455 - C4-dicarboxylate ABC transporter, at 424,890 to 425,378
_RS31455
AZOBR_RS31460: AZOBR_RS31460 - tripartite tricarboxylate transporter TctA, at 425,406 to 426,878
_RS31460
AZOBR_RS31465: AZOBR_RS31465 - membrane protein, at 426,989 to 427,657
_RS31465
AZOBR_RS31470: AZOBR_RS31470 - universal stress protein UspA, at 427,671 to 428,549
_RS31470
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 424.818 kb on + strand at 424.819 kb on - strand at 424.819 kb on - strand at 424.819 kb on - strand at 425.376 kb on + strand at 425.376 kb on + strand at 425.458 kb on - strand at 425.607 kb on + strand, within AZOBR_RS31460 at 425.607 kb on + strand, within AZOBR_RS31460 at 425.607 kb on + strand, within AZOBR_RS31460 at 425.607 kb on + strand, within AZOBR_RS31460 at 425.608 kb on - strand, within AZOBR_RS31460 at 425.608 kb on - strand, within AZOBR_RS31460 at 425.608 kb on - strand, within AZOBR_RS31460 at 425.623 kb on - strand, within AZOBR_RS31460 at 425.623 kb on - strand, within AZOBR_RS31460 at 425.623 kb on - strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.067 kb on - strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.244 kb on - strand, within AZOBR_RS31460 at 426.495 kb on + strand, within AZOBR_RS31460 at 426.583 kb on - strand, within AZOBR_RS31460 at 426.618 kb on + strand, within AZOBR_RS31460 at 426.948 kb on + strand at 426.948 kb on + strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 424,818 + -3.0 424,819 - -3.4 424,819 - -1.9 424,819 - -0.4 425,376 + +0.1 425,376 + -0.9 425,458 - +0.7 425,607 + AZOBR_RS31460 0.14 +1.1 425,607 + AZOBR_RS31460 0.14 -0.9 425,607 + AZOBR_RS31460 0.14 -1.2 425,607 + AZOBR_RS31460 0.14 -0.6 425,608 - AZOBR_RS31460 0.14 -0.2 425,608 - AZOBR_RS31460 0.14 -3.1 425,608 - AZOBR_RS31460 0.14 +0.8 425,623 - AZOBR_RS31460 0.15 +1.6 425,623 - AZOBR_RS31460 0.15 -0.3 425,623 - AZOBR_RS31460 0.15 -0.1 426,066 + AZOBR_RS31460 0.45 +0.0 426,066 + AZOBR_RS31460 0.45 +1.3 426,066 + AZOBR_RS31460 0.45 -1.3 426,066 + AZOBR_RS31460 0.45 +0.4 426,067 - AZOBR_RS31460 0.45 +0.0 426,243 + AZOBR_RS31460 0.57 -3.1 426,243 + AZOBR_RS31460 0.57 +0.4 426,243 + AZOBR_RS31460 0.57 -2.1 426,244 - AZOBR_RS31460 0.57 +1.0 426,495 + AZOBR_RS31460 0.74 -2.4 426,583 - AZOBR_RS31460 0.80 +1.3 426,618 + AZOBR_RS31460 0.82 -0.2 426,948 + -0.9 426,948 + +0.9 426,949 - -1.9 426,949 - -0.3 426,949 - +0.3 426,949 - -0.4 427,589 + AZOBR_RS31465 0.90 +0.9 427,589 + AZOBR_RS31465 0.90 +0.2 427,589 + AZOBR_RS31465 0.90 -2.1 427,589 + AZOBR_RS31465 0.90 +1.0 427,590 - AZOBR_RS31465 0.90 +1.6 427,590 - AZOBR_RS31465 0.90 -1.1 427,590 - AZOBR_RS31465 0.90 +0.6 427,590 - AZOBR_RS31465 0.90 -2.1 427,590 - AZOBR_RS31465 0.90 -0.6
Or see this region's nucleotide sequence