Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30775 and AZOBR_RS30780 are separated by 31 nucleotides AZOBR_RS30780 and AZOBR_RS30785 are separated by 5 nucleotides AZOBR_RS30785 and AZOBR_RS30790 overlap by 4 nucleotides
AZOBR_RS30775: AZOBR_RS30775 - agmatinase, at 265,114 to 266,169
_RS30775
AZOBR_RS30780: AZOBR_RS30780 - spermidine/putrescine ABC transporter permease, at 266,201 to 266,995
_RS30780
AZOBR_RS30785: AZOBR_RS30785 - ABC transporter permease, at 267,001 to 267,855
_RS30785
AZOBR_RS30790: AZOBR_RS30790 - ABC transporter ATP-binding protein, at 267,852 to 268,913
_RS30790
Position (kb) 266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 265.214 kb on + strand at 265.373 kb on + strand, within AZOBR_RS30775 at 265.373 kb on + strand, within AZOBR_RS30775 at 265.374 kb on - strand, within AZOBR_RS30775 at 265.374 kb on - strand, within AZOBR_RS30775 at 265.475 kb on + strand, within AZOBR_RS30775 at 265.475 kb on + strand, within AZOBR_RS30775 at 265.475 kb on + strand, within AZOBR_RS30775 at 265.476 kb on - strand, within AZOBR_RS30775 at 265.476 kb on - strand, within AZOBR_RS30775 at 265.682 kb on + strand, within AZOBR_RS30775 at 265.745 kb on + strand, within AZOBR_RS30775 at 265.745 kb on + strand, within AZOBR_RS30775 at 265.745 kb on + strand, within AZOBR_RS30775 at 265.746 kb on - strand, within AZOBR_RS30775 at 265.746 kb on - strand, within AZOBR_RS30775 at 265.863 kb on - strand, within AZOBR_RS30775 at 266.129 kb on + strand at 266.129 kb on + strand at 266.130 kb on - strand at 266.322 kb on + strand, within AZOBR_RS30780 at 266.322 kb on + strand, within AZOBR_RS30780 at 266.322 kb on + strand, within AZOBR_RS30780 at 266.322 kb on + strand, within AZOBR_RS30780 at 266.388 kb on + strand, within AZOBR_RS30780 at 266.388 kb on + strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.400 kb on + strand, within AZOBR_RS30780 at 266.400 kb on + strand, within AZOBR_RS30780 at 266.400 kb on + strand, within AZOBR_RS30780 at 266.401 kb on - strand, within AZOBR_RS30780 at 266.448 kb on + strand, within AZOBR_RS30780 at 266.449 kb on - strand, within AZOBR_RS30780 at 266.449 kb on - strand, within AZOBR_RS30780 at 266.449 kb on - strand, within AZOBR_RS30780 at 266.526 kb on + strand, within AZOBR_RS30780 at 266.526 kb on + strand, within AZOBR_RS30780 at 266.527 kb on - strand, within AZOBR_RS30780 at 266.527 kb on - strand, within AZOBR_RS30780 at 266.859 kb on + strand, within AZOBR_RS30780 at 266.860 kb on - strand, within AZOBR_RS30780 at 267.110 kb on + strand, within AZOBR_RS30785 at 267.110 kb on + strand, within AZOBR_RS30785 at 267.182 kb on + strand, within AZOBR_RS30785 at 267.183 kb on - strand, within AZOBR_RS30785 at 267.312 kb on - strand, within AZOBR_RS30785 at 267.339 kb on - strand, within AZOBR_RS30785 at 267.371 kb on + strand, within AZOBR_RS30785 at 267.372 kb on - strand, within AZOBR_RS30785 at 267.372 kb on - strand, within AZOBR_RS30785 at 267.372 kb on - strand at 267.585 kb on - strand, within AZOBR_RS30785 at 267.585 kb on - strand, within AZOBR_RS30785 at 267.689 kb on + strand, within AZOBR_RS30785 at 267.689 kb on + strand, within AZOBR_RS30785 at 267.690 kb on - strand, within AZOBR_RS30785 at 267.690 kb on - strand at 267.716 kb on + strand, within AZOBR_RS30785
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 265,214 + -1.3 265,373 + AZOBR_RS30775 0.25 -0.6 265,373 + AZOBR_RS30775 0.25 +0.3 265,374 - AZOBR_RS30775 0.25 +1.7 265,374 - AZOBR_RS30775 0.25 +0.4 265,475 + AZOBR_RS30775 0.34 +0.3 265,475 + AZOBR_RS30775 0.34 -1.0 265,475 + AZOBR_RS30775 0.34 -1.0 265,476 - AZOBR_RS30775 0.34 +1.3 265,476 - AZOBR_RS30775 0.34 -1.9 265,682 + AZOBR_RS30775 0.54 -0.1 265,745 + AZOBR_RS30775 0.60 +1.3 265,745 + AZOBR_RS30775 0.60 +0.3 265,745 + AZOBR_RS30775 0.60 +0.3 265,746 - AZOBR_RS30775 0.60 +1.2 265,746 - AZOBR_RS30775 0.60 -0.3 265,863 - AZOBR_RS30775 0.71 -1.5 266,129 + -0.8 266,129 + -1.6 266,130 - +0.5 266,322 + AZOBR_RS30780 0.15 -0.1 266,322 + AZOBR_RS30780 0.15 +0.0 266,322 + AZOBR_RS30780 0.15 +0.7 266,322 + AZOBR_RS30780 0.15 +0.6 266,388 + AZOBR_RS30780 0.24 +1.1 266,388 + AZOBR_RS30780 0.24 +0.6 266,389 - AZOBR_RS30780 0.24 -2.9 266,389 - AZOBR_RS30780 0.24 +0.1 266,389 - AZOBR_RS30780 0.24 +2.2 266,389 - AZOBR_RS30780 0.24 +3.2 266,400 + AZOBR_RS30780 0.25 +0.3 266,400 + AZOBR_RS30780 0.25 +1.0 266,400 + AZOBR_RS30780 0.25 +1.4 266,401 - AZOBR_RS30780 0.25 +2.6 266,448 + AZOBR_RS30780 0.31 +1.1 266,449 - AZOBR_RS30780 0.31 -0.7 266,449 - AZOBR_RS30780 0.31 -0.3 266,449 - AZOBR_RS30780 0.31 +0.0 266,526 + AZOBR_RS30780 0.41 +0.5 266,526 + AZOBR_RS30780 0.41 +0.9 266,527 - AZOBR_RS30780 0.41 -0.4 266,527 - AZOBR_RS30780 0.41 -1.8 266,859 + AZOBR_RS30780 0.83 +2.6 266,860 - AZOBR_RS30780 0.83 +2.3 267,110 + AZOBR_RS30785 0.13 -1.7 267,110 + AZOBR_RS30785 0.13 -1.1 267,182 + AZOBR_RS30785 0.21 -0.7 267,183 - AZOBR_RS30785 0.21 -0.4 267,312 - AZOBR_RS30785 0.36 +0.6 267,339 - AZOBR_RS30785 0.40 +0.2 267,371 + AZOBR_RS30785 0.43 -0.1 267,372 - AZOBR_RS30785 0.43 +0.8 267,372 - AZOBR_RS30785 0.43 +1.4 267,372 - +1.6 267,585 - AZOBR_RS30785 0.68 -0.6 267,585 - AZOBR_RS30785 0.68 -0.1 267,689 + AZOBR_RS30785 0.80 -0.2 267,689 + AZOBR_RS30785 0.80 +0.8 267,690 - AZOBR_RS30785 0.81 +0.0 267,690 - -0.4 267,716 + AZOBR_RS30785 0.84 -1.7
Or see this region's nucleotide sequence