Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23580 and AZOBR_RS23585 are separated by 91 nucleotides AZOBR_RS23585 and AZOBR_RS23590 overlap by 11 nucleotides AZOBR_RS23590 and AZOBR_RS23595 are separated by 169 nucleotides
AZOBR_RS23580: AZOBR_RS23580 - membrane protein, at 321,741 to 322,877
_RS23580
AZOBR_RS23585: AZOBR_RS23585 - hypothetical protein, at 322,969 to 323,829
_RS23585
AZOBR_RS23590: AZOBR_RS23590 - chromosome partitioning protein, at 323,819 to 324,853
_RS23590
AZOBR_RS23595: AZOBR_RS23595 - peptidase M48 Ste24p, at 325,023 to 325,787
_RS23595
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 323.418 kb on - strand, within AZOBR_RS23585 at 323.510 kb on + strand, within AZOBR_RS23585 at 323.510 kb on + strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.821 kb on - strand at 323.855 kb on - strand at 323.958 kb on + strand, within AZOBR_RS23590 at 323.959 kb on - strand, within AZOBR_RS23590 at 324.261 kb on + strand, within AZOBR_RS23590 at 324.261 kb on + strand, within AZOBR_RS23590 at 324.261 kb on + strand, within AZOBR_RS23590 at 324.393 kb on - strand, within AZOBR_RS23590 at 324.400 kb on - strand, within AZOBR_RS23590 at 324.462 kb on + strand, within AZOBR_RS23590 at 324.462 kb on + strand, within AZOBR_RS23590 at 324.463 kb on - strand, within AZOBR_RS23590 at 324.463 kb on - strand, within AZOBR_RS23590 at 324.465 kb on + strand, within AZOBR_RS23590 at 324.465 kb on + strand, within AZOBR_RS23590 at 324.466 kb on - strand, within AZOBR_RS23590 at 324.466 kb on - strand, within AZOBR_RS23590 at 324.466 kb on - strand, within AZOBR_RS23590 at 324.760 kb on - strand at 325.036 kb on + strand at 325.036 kb on + strand at 325.036 kb on + strand at 325.258 kb on + strand, within AZOBR_RS23595 at 325.258 kb on + strand, within AZOBR_RS23595 at 325.258 kb on + strand, within AZOBR_RS23595 at 325.259 kb on - strand, within AZOBR_RS23595 at 325.454 kb on - strand, within AZOBR_RS23595 at 325.454 kb on - strand, within AZOBR_RS23595 at 325.471 kb on + strand, within AZOBR_RS23595 at 325.471 kb on + strand, within AZOBR_RS23595 at 325.472 kb on - strand, within AZOBR_RS23595 at 325.606 kb on + strand, within AZOBR_RS23595
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 323,418 - AZOBR_RS23585 0.52 +0.8 323,510 + AZOBR_RS23585 0.63 +2.4 323,510 + AZOBR_RS23585 0.63 -2.6 323,511 - AZOBR_RS23585 0.63 +0.5 323,511 - AZOBR_RS23585 0.63 +0.1 323,511 - AZOBR_RS23585 0.63 -0.8 323,511 - AZOBR_RS23585 0.63 +0.6 323,511 - AZOBR_RS23585 0.63 +0.5 323,511 - AZOBR_RS23585 0.63 -0.2 323,821 - -1.4 323,855 - +0.1 323,958 + AZOBR_RS23590 0.13 +1.1 323,959 - AZOBR_RS23590 0.14 +1.6 324,261 + AZOBR_RS23590 0.43 -1.7 324,261 + AZOBR_RS23590 0.43 +0.0 324,261 + AZOBR_RS23590 0.43 +1.7 324,393 - AZOBR_RS23590 0.55 +1.0 324,400 - AZOBR_RS23590 0.56 +1.8 324,462 + AZOBR_RS23590 0.62 +0.2 324,462 + AZOBR_RS23590 0.62 -0.5 324,463 - AZOBR_RS23590 0.62 +2.0 324,463 - AZOBR_RS23590 0.62 +0.2 324,465 + AZOBR_RS23590 0.62 -0.0 324,465 + AZOBR_RS23590 0.62 +0.0 324,466 - AZOBR_RS23590 0.63 -0.1 324,466 - AZOBR_RS23590 0.63 -0.8 324,466 - AZOBR_RS23590 0.63 +4.1 324,760 - +0.3 325,036 + +1.1 325,036 + -1.4 325,036 + +0.8 325,258 + AZOBR_RS23595 0.31 -3.4 325,258 + AZOBR_RS23595 0.31 +0.4 325,258 + AZOBR_RS23595 0.31 +0.0 325,259 - AZOBR_RS23595 0.31 +1.8 325,454 - AZOBR_RS23595 0.56 -2.2 325,454 - AZOBR_RS23595 0.56 -1.6 325,471 + AZOBR_RS23595 0.59 -1.6 325,471 + AZOBR_RS23595 0.59 +0.8 325,472 - AZOBR_RS23595 0.59 -0.0 325,606 + AZOBR_RS23595 0.76 +3.8
Or see this region's nucleotide sequence