Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22755 and AZOBR_RS22760 are separated by 87 nucleotides AZOBR_RS22760 and AZOBR_RS22765 are separated by 17 nucleotides AZOBR_RS22765 and AZOBR_RS22770 overlap by 4 nucleotides AZOBR_RS22770 and AZOBR_RS22775 are separated by 3 nucleotides
AZOBR_RS22755: AZOBR_RS22755 - dihydropyrimidinase, at 115,329 to 116,765
_RS22755
AZOBR_RS22760: AZOBR_RS22760 - Asp/Glu/hydantoin racemase, at 116,853 to 117,584
_RS22760
AZOBR_RS22765: AZOBR_RS22765 - hydrolase, at 117,602 to 118,933
_RS22765
AZOBR_RS22770: AZOBR_RS22770 - ABC transporter ATP-binding protein, at 118,930 to 119,712
_RS22770
AZOBR_RS22775: AZOBR_RS22775 - ABC transporter permease, at 119,716 to 120,522
_RS22775
Position (kb)
117
118
119 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 116.845 kb on + strand at 116.845 kb on + strand at 117.163 kb on + strand, within AZOBR_RS22760 at 117.164 kb on - strand, within AZOBR_RS22760 at 117.164 kb on - strand, within AZOBR_RS22760 at 117.199 kb on + strand, within AZOBR_RS22760 at 117.199 kb on + strand, within AZOBR_RS22760 at 117.200 kb on - strand, within AZOBR_RS22760 at 117.458 kb on - strand, within AZOBR_RS22760 at 117.584 kb on + strand at 117.585 kb on - strand at 118.137 kb on + strand, within AZOBR_RS22765 at 118.137 kb on + strand, within AZOBR_RS22765 at 118.137 kb on + strand, within AZOBR_RS22765 at 118.137 kb on + strand, within AZOBR_RS22765 at 118.138 kb on - strand, within AZOBR_RS22765 at 118.138 kb on - strand, within AZOBR_RS22765 at 118.138 kb on - strand, within AZOBR_RS22765 at 118.138 kb on - strand, within AZOBR_RS22765 at 118.138 kb on - strand, within AZOBR_RS22765 at 118.668 kb on + strand, within AZOBR_RS22765 at 119.354 kb on + strand, within AZOBR_RS22770 at 119.354 kb on + strand, within AZOBR_RS22770 at 119.354 kb on + strand, within AZOBR_RS22770 at 119.354 kb on + strand, within AZOBR_RS22770 at 119.355 kb on - strand, within AZOBR_RS22770 at 119.355 kb on - strand, within AZOBR_RS22770 at 119.355 kb on - strand, within AZOBR_RS22770 at 119.355 kb on - strand, within AZOBR_RS22770 at 119.355 kb on - strand, within AZOBR_RS22770 at 119.847 kb on - strand, within AZOBR_RS22775 at 119.858 kb on + strand, within AZOBR_RS22775 at 119.858 kb on + strand, within AZOBR_RS22775 at 119.859 kb on - strand, within AZOBR_RS22775 at 119.859 kb on - strand, within AZOBR_RS22775 at 119.859 kb on - strand, within AZOBR_RS22775 at 119.861 kb on + strand, within AZOBR_RS22775 at 119.861 kb on + strand, within AZOBR_RS22775 at 119.861 kb on + strand, within AZOBR_RS22775 at 119.861 kb on + strand, within AZOBR_RS22775 at 119.862 kb on - strand, within AZOBR_RS22775 at 119.862 kb on - strand, within AZOBR_RS22775 at 119.862 kb on - strand, within AZOBR_RS22775 at 119.862 kb on - strand, within AZOBR_RS22775 at 119.880 kb on - strand, within AZOBR_RS22775 at 119.880 kb on - strand, within AZOBR_RS22775
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 116,845 + -3.2 116,845 + +0.1 117,163 + AZOBR_RS22760 0.42 -0.4 117,164 - AZOBR_RS22760 0.42 -1.5 117,164 - AZOBR_RS22760 0.42 -0.2 117,199 + AZOBR_RS22760 0.47 +0.7 117,199 + AZOBR_RS22760 0.47 +2.4 117,200 - AZOBR_RS22760 0.47 -0.9 117,458 - AZOBR_RS22760 0.83 -2.6 117,584 + +0.4 117,585 - -0.1 118,137 + AZOBR_RS22765 0.40 -0.3 118,137 + AZOBR_RS22765 0.40 +2.0 118,137 + AZOBR_RS22765 0.40 +2.4 118,137 + AZOBR_RS22765 0.40 -0.4 118,138 - AZOBR_RS22765 0.40 -1.1 118,138 - AZOBR_RS22765 0.40 -0.5 118,138 - AZOBR_RS22765 0.40 -0.7 118,138 - AZOBR_RS22765 0.40 +1.4 118,138 - AZOBR_RS22765 0.40 +0.7 118,668 + AZOBR_RS22765 0.80 -0.2 119,354 + AZOBR_RS22770 0.54 +0.1 119,354 + AZOBR_RS22770 0.54 +2.4 119,354 + AZOBR_RS22770 0.54 -0.9 119,354 + AZOBR_RS22770 0.54 +2.4 119,355 - AZOBR_RS22770 0.54 +0.8 119,355 - AZOBR_RS22770 0.54 -1.0 119,355 - AZOBR_RS22770 0.54 +0.3 119,355 - AZOBR_RS22770 0.54 -0.9 119,355 - AZOBR_RS22770 0.54 -0.8 119,847 - AZOBR_RS22775 0.16 +0.7 119,858 + AZOBR_RS22775 0.18 -2.5 119,858 + AZOBR_RS22775 0.18 -2.7 119,859 - AZOBR_RS22775 0.18 -0.9 119,859 - AZOBR_RS22775 0.18 +1.4 119,859 - AZOBR_RS22775 0.18 +0.5 119,861 + AZOBR_RS22775 0.18 +0.7 119,861 + AZOBR_RS22775 0.18 -0.6 119,861 + AZOBR_RS22775 0.18 +0.5 119,861 + AZOBR_RS22775 0.18 +1.5 119,862 - AZOBR_RS22775 0.18 +0.7 119,862 - AZOBR_RS22775 0.18 -1.2 119,862 - AZOBR_RS22775 0.18 -0.6 119,862 - AZOBR_RS22775 0.18 -1.4 119,880 - AZOBR_RS22775 0.20 +1.8 119,880 - AZOBR_RS22775 0.20 +0.3
Or see this region's nucleotide sequence