Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21025 and AZOBR_RS21030 are separated by 115 nucleotides AZOBR_RS21030 and AZOBR_RS21035 are separated by 103 nucleotides
AZOBR_RS21025: AZOBR_RS21025 - beta-lactamase, at 1,476,257 to 1,477,447
_RS21025
AZOBR_RS21030: AZOBR_RS21030 - MFS transporter, at 1,477,563 to 1,478,774
_RS21030
AZOBR_RS21035: AZOBR_RS21035 - gamma-glutamyltransferase, at 1,478,878 to 1,480,422
_RS21035
Position (kb) 1477
1478
1479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1476.683 kb on + strand, within AZOBR_RS21025 at 1476.684 kb on - strand, within AZOBR_RS21025 at 1476.684 kb on - strand, within AZOBR_RS21025 at 1476.684 kb on - strand, within AZOBR_RS21025 at 1476.774 kb on - strand, within AZOBR_RS21025 at 1476.947 kb on + strand, within AZOBR_RS21025 at 1476.948 kb on - strand, within AZOBR_RS21025 at 1476.948 kb on - strand, within AZOBR_RS21025 at 1477.028 kb on + strand, within AZOBR_RS21025 at 1477.029 kb on - strand, within AZOBR_RS21025 at 1477.029 kb on - strand, within AZOBR_RS21025 at 1477.376 kb on + strand at 1477.376 kb on + strand at 1477.377 kb on - strand at 1477.377 kb on - strand at 1477.377 kb on - strand at 1477.728 kb on + strand, within AZOBR_RS21030 at 1477.860 kb on + strand, within AZOBR_RS21030 at 1477.861 kb on - strand, within AZOBR_RS21030 at 1478.244 kb on + strand, within AZOBR_RS21030 at 1478.244 kb on + strand, within AZOBR_RS21030 at 1478.245 kb on - strand, within AZOBR_RS21030 at 1478.245 kb on - strand, within AZOBR_RS21030 at 1478.245 kb on - strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1479.197 kb on + strand, within AZOBR_RS21035 at 1479.198 kb on - strand, within AZOBR_RS21035 at 1479.248 kb on + strand, within AZOBR_RS21035 at 1479.248 kb on + strand, within AZOBR_RS21035 at 1479.249 kb on - strand, within AZOBR_RS21035 at 1479.249 kb on - strand, within AZOBR_RS21035 at 1479.371 kb on + strand, within AZOBR_RS21035 at 1479.372 kb on - strand, within AZOBR_RS21035 at 1479.372 kb on - strand, within AZOBR_RS21035
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,476,683 + AZOBR_RS21025 0.36 +0.2 1,476,684 - AZOBR_RS21025 0.36 -0.3 1,476,684 - AZOBR_RS21025 0.36 +0.1 1,476,684 - AZOBR_RS21025 0.36 -1.3 1,476,774 - AZOBR_RS21025 0.43 +2.8 1,476,947 + AZOBR_RS21025 0.58 -1.6 1,476,948 - AZOBR_RS21025 0.58 -0.2 1,476,948 - AZOBR_RS21025 0.58 -2.9 1,477,028 + AZOBR_RS21025 0.65 -2.0 1,477,029 - AZOBR_RS21025 0.65 -0.9 1,477,029 - AZOBR_RS21025 0.65 -1.9 1,477,376 + +2.2 1,477,376 + -0.1 1,477,377 - +1.3 1,477,377 - +2.2 1,477,377 - +0.1 1,477,728 + AZOBR_RS21030 0.14 -0.3 1,477,860 + AZOBR_RS21030 0.25 +1.3 1,477,861 - AZOBR_RS21030 0.25 -0.9 1,478,244 + AZOBR_RS21030 0.56 -0.9 1,478,244 + AZOBR_RS21030 0.56 +0.1 1,478,245 - AZOBR_RS21030 0.56 -1.2 1,478,245 - AZOBR_RS21030 0.56 -1.2 1,478,245 - AZOBR_RS21030 0.56 -0.2 1,478,250 + AZOBR_RS21030 0.57 -0.6 1,478,250 + AZOBR_RS21030 0.57 +0.8 1,478,250 + AZOBR_RS21030 0.57 +0.2 1,478,250 + AZOBR_RS21030 0.57 -1.3 1,478,251 - AZOBR_RS21030 0.57 -2.1 1,478,251 - AZOBR_RS21030 0.57 +0.5 1,478,251 - AZOBR_RS21030 0.57 -0.6 1,478,251 - AZOBR_RS21030 0.57 +0.3 1,479,197 + AZOBR_RS21035 0.21 +0.4 1,479,198 - AZOBR_RS21035 0.21 -2.6 1,479,248 + AZOBR_RS21035 0.24 -0.0 1,479,248 + AZOBR_RS21035 0.24 +0.6 1,479,249 - AZOBR_RS21035 0.24 +0.8 1,479,249 - AZOBR_RS21035 0.24 +0.3 1,479,371 + AZOBR_RS21035 0.32 -2.1 1,479,372 - AZOBR_RS21035 0.32 +0.1 1,479,372 - AZOBR_RS21035 0.32 +0.0
Or see this region's nucleotide sequence