Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18365 and AZOBR_RS18370 are separated by 181 nucleotides AZOBR_RS18370 and AZOBR_RS18375 are separated by 316 nucleotides AZOBR_RS18375 and AZOBR_RS18380 are separated by 239 nucleotides
AZOBR_RS18365: AZOBR_RS18365 - hypothetical protein, at 885,647 to 885,889
_RS18365
AZOBR_RS18370: AZOBR_RS18370 - aspartate decarboxylase, at 886,071 to 886,505
_RS18370
AZOBR_RS18375: AZOBR_RS18375 - chemotaxis protein, at 886,822 to 887,127
_RS18375
AZOBR_RS18380: AZOBR_RS18380 - chemotaxis protein, at 887,367 to 888,833
_RS18380
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 885.837 kb on - strand, within AZOBR_RS18365 at 885.865 kb on - strand at 885.873 kb on - strand at 885.873 kb on - strand at 885.926 kb on + strand at 885.927 kb on - strand at 886.150 kb on + strand, within AZOBR_RS18370 at 886.235 kb on - strand, within AZOBR_RS18370 at 886.327 kb on + strand, within AZOBR_RS18370 at 886.327 kb on + strand, within AZOBR_RS18370 at 886.328 kb on - strand, within AZOBR_RS18370 at 886.328 kb on - strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.394 kb on - strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.445 kb on - strand, within AZOBR_RS18370 at 886.445 kb on - strand, within AZOBR_RS18370 at 886.485 kb on - strand at 886.635 kb on + strand at 886.673 kb on - strand at 886.737 kb on + strand at 886.738 kb on - strand at 886.740 kb on + strand at 886.740 kb on + strand at 886.741 kb on - strand at 886.786 kb on - strand at 886.849 kb on + strand at 886.849 kb on + strand at 886.849 kb on + strand at 886.850 kb on - strand at 887.047 kb on + strand, within AZOBR_RS18375 at 887.048 kb on - strand, within AZOBR_RS18375 at 887.449 kb on - strand at 887.530 kb on - strand at 887.572 kb on - strand, within AZOBR_RS18380 at 887.739 kb on + strand, within AZOBR_RS18380 at 887.740 kb on - strand at 887.740 kb on - strand, within AZOBR_RS18380 at 887.740 kb on - strand, within AZOBR_RS18380 at 888.003 kb on + strand at 888.058 kb on - strand, within AZOBR_RS18380
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 885,837 - AZOBR_RS18365 0.78 -0.9 885,865 - +0.8 885,873 - -2.4 885,873 - -2.9 885,926 + -0.4 885,927 - +0.4 886,150 + AZOBR_RS18370 0.18 -0.8 886,235 - AZOBR_RS18370 0.38 +0.3 886,327 + AZOBR_RS18370 0.59 -0.3 886,327 + AZOBR_RS18370 0.59 -2.4 886,328 - AZOBR_RS18370 0.59 +0.3 886,328 - AZOBR_RS18370 0.59 -3.4 886,336 + AZOBR_RS18370 0.61 +1.2 886,336 + AZOBR_RS18370 0.61 -2.0 886,336 + AZOBR_RS18370 0.61 +0.0 886,336 + AZOBR_RS18370 0.61 -2.3 886,336 + AZOBR_RS18370 0.61 -0.8 886,336 + AZOBR_RS18370 0.61 +0.6 886,337 - AZOBR_RS18370 0.61 +0.0 886,337 - AZOBR_RS18370 0.61 +0.2 886,337 - AZOBR_RS18370 0.61 +1.5 886,337 - AZOBR_RS18370 0.61 +0.2 886,337 - AZOBR_RS18370 0.61 +0.5 886,337 - AZOBR_RS18370 0.61 -2.1 886,337 - AZOBR_RS18370 0.61 -0.9 886,337 - AZOBR_RS18370 0.61 +2.3 886,337 - AZOBR_RS18370 0.61 -0.2 886,337 - AZOBR_RS18370 0.61 -1.3 886,337 - AZOBR_RS18370 0.61 +0.5 886,337 - AZOBR_RS18370 0.61 +1.5 886,393 + AZOBR_RS18370 0.74 +0.3 886,393 + AZOBR_RS18370 0.74 +2.2 886,393 + AZOBR_RS18370 0.74 -0.5 886,394 - AZOBR_RS18370 0.74 +0.2 886,444 + AZOBR_RS18370 0.86 +2.0 886,444 + AZOBR_RS18370 0.86 -0.6 886,444 + AZOBR_RS18370 0.86 +0.6 886,444 + AZOBR_RS18370 0.86 +0.1 886,445 - AZOBR_RS18370 0.86 +1.3 886,445 - AZOBR_RS18370 0.86 -0.2 886,485 - +0.9 886,635 + -0.5 886,673 - +2.3 886,737 + +0.2 886,738 - +2.9 886,740 + -1.3 886,740 + +1.0 886,741 - +1.0 886,786 - -1.8 886,849 + +0.6 886,849 + +0.3 886,849 + +0.1 886,850 - +1.8 887,047 + AZOBR_RS18375 0.74 +2.0 887,048 - AZOBR_RS18375 0.74 +1.4 887,449 - +2.2 887,530 - +3.3 887,572 - AZOBR_RS18380 0.14 +2.2 887,739 + AZOBR_RS18380 0.25 +2.0 887,740 - -1.0 887,740 - AZOBR_RS18380 0.25 +2.2 887,740 - AZOBR_RS18380 0.25 +2.4 888,003 + +2.6 888,058 - AZOBR_RS18380 0.47 +2.3
Or see this region's nucleotide sequence