Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS17100

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS17095 and AZOBR_RS17100 overlap by 12 nucleotidesAZOBR_RS17100 and AZOBR_RS17105 are separated by 158 nucleotides AZOBR_RS17095: AZOBR_RS17095 - exported protein of unknown function, at 592,056 to 592,475 _RS17095 AZOBR_RS17100: AZOBR_RS17100 - AraC family transcriptional regulator, at 592,464 to 593,231 _RS17100 AZOBR_RS17105: AZOBR_RS17105 - Fosmidomycin resistance protein, at 593,390 to 594,595 _RS17105 Position (kb) 592 593 594Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 591.623 kb on + strandat 591.624 kb on - strandat 591.843 kb on + strandat 591.843 kb on + strandat 591.844 kb on - strandat 591.844 kb on - strandat 591.844 kb on - strandat 591.844 kb on - strandat 592.123 kb on - strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.136 kb on + strand, within AZOBR_RS17095at 592.137 kb on - strand, within AZOBR_RS17095at 592.137 kb on - strand, within AZOBR_RS17095at 592.137 kb on - strand, within AZOBR_RS17095at 592.137 kb on - strand, within AZOBR_RS17095at 592.137 kb on - strand, within AZOBR_RS17095at 592.138 kb on + strand, within AZOBR_RS17095at 592.138 kb on + strand, within AZOBR_RS17095at 592.139 kb on - strand, within AZOBR_RS17095at 592.139 kb on - strand, within AZOBR_RS17095at 592.146 kb on + strand, within AZOBR_RS17095at 592.252 kb on + strand, within AZOBR_RS17095at 592.252 kb on + strand, within AZOBR_RS17095at 592.252 kb on + strand, within AZOBR_RS17095at 592.253 kb on - strand, within AZOBR_RS17095at 592.274 kb on + strand, within AZOBR_RS17095at 592.275 kb on - strand, within AZOBR_RS17095at 592.288 kb on + strand, within AZOBR_RS17095at 592.289 kb on - strand, within AZOBR_RS17095at 592.492 kb on + strandat 592.492 kb on + strandat 592.492 kb on + strandat 592.492 kb on + strandat 592.492 kb on + strandat 592.492 kb on + strandat 592.492 kb on + strandat 592.493 kb on - strandat 592.493 kb on - strandat 592.556 kb on - strand, within AZOBR_RS17100at 592.991 kb on - strand, within AZOBR_RS17100at 593.307 kb on + strandat 593.307 kb on + strandat 593.308 kb on - strandat 593.308 kb on - strandat 593.308 kb on - strandat 593.308 kb on - strandat 593.308 kb on - strandat 593.308 kb on - strandat 593.507 kb on + strandat 593.570 kb on + strand, within AZOBR_RS17105at 593.571 kb on - strand, within AZOBR_RS17105at 593.571 kb on - strand, within AZOBR_RS17105at 593.571 kb on - strand, within AZOBR_RS17105at 593.702 kb on + strand, within AZOBR_RS17105at 593.873 kb on + strand, within AZOBR_RS17105at 593.873 kb on + strand, within AZOBR_RS17105at 593.873 kb on + strand, within AZOBR_RS17105at 593.874 kb on - strand, within AZOBR_RS17105at 593.874 kb on - strand, within AZOBR_RS17105at 593.967 kb on - strand, within AZOBR_RS17105at 594.086 kb on + strand, within AZOBR_RS17105at 594.086 kb on + strand, within AZOBR_RS17105at 594.086 kb on + strand, within AZOBR_RS17105at 594.086 kb on + strand, within AZOBR_RS17105at 594.087 kb on - strand, within AZOBR_RS17105at 594.113 kb on + strand, within AZOBR_RS17105at 594.113 kb on + strand, within AZOBR_RS17105at 594.113 kb on + strand, within AZOBR_RS17105at 594.114 kb on - strand, within AZOBR_RS17105at 594.116 kb on + strand, within AZOBR_RS17105at 594.116 kb on + strand, within AZOBR_RS17105at 594.117 kb on - strand, within AZOBR_RS17105at 594.117 kb on - strand, within AZOBR_RS17105at 594.117 kb on - strand, within AZOBR_RS17105

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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591,623 + +0.0
591,624 - -0.6
591,843 + -0.3
591,843 + -0.5
591,844 - +0.7
591,844 - -1.0
591,844 - -3.3
591,844 - +1.1
592,123 - AZOBR_RS17095 0.16 +0.4
592,136 + AZOBR_RS17095 0.19 +1.3
592,136 + AZOBR_RS17095 0.19 -1.7
592,136 + AZOBR_RS17095 0.19 +0.4
592,136 + AZOBR_RS17095 0.19 +0.7
592,136 + AZOBR_RS17095 0.19 -0.3
592,136 + AZOBR_RS17095 0.19 +0.2
592,136 + AZOBR_RS17095 0.19 +1.4
592,136 + AZOBR_RS17095 0.19 -0.0
592,136 + AZOBR_RS17095 0.19 -1.6
592,136 + AZOBR_RS17095 0.19 +1.1
592,136 + AZOBR_RS17095 0.19 -0.6
592,137 - AZOBR_RS17095 0.19 -0.5
592,137 - AZOBR_RS17095 0.19 +1.2
592,137 - AZOBR_RS17095 0.19 -0.9
592,137 - AZOBR_RS17095 0.19 -3.5
592,137 - AZOBR_RS17095 0.19 +0.2
592,138 + AZOBR_RS17095 0.20 +1.3
592,138 + AZOBR_RS17095 0.20 -1.4
592,139 - AZOBR_RS17095 0.20 -0.3
592,139 - AZOBR_RS17095 0.20 -1.3
592,146 + AZOBR_RS17095 0.21 +0.3
592,252 + AZOBR_RS17095 0.47 +0.8
592,252 + AZOBR_RS17095 0.47 +2.3
592,252 + AZOBR_RS17095 0.47 +0.3
592,253 - AZOBR_RS17095 0.47 +1.0
592,274 + AZOBR_RS17095 0.52 +0.7
592,275 - AZOBR_RS17095 0.52 -3.5
592,288 + AZOBR_RS17095 0.55 -0.2
592,289 - AZOBR_RS17095 0.55 -1.0
592,492 + -0.9
592,492 + +1.8
592,492 + -1.1
592,492 + -2.8
592,492 + +0.2
592,492 + +1.3
592,492 + -0.1
592,493 - -1.9
592,493 - +0.6
592,556 - AZOBR_RS17100 0.12 -1.2
592,991 - AZOBR_RS17100 0.69 -1.5
593,307 + -1.9
593,307 + +0.3
593,308 - +2.3
593,308 - +0.9
593,308 - -1.8
593,308 - -0.4
593,308 - -0.6
593,308 - +1.7
593,507 + +2.3
593,570 + AZOBR_RS17105 0.15 -0.3
593,571 - AZOBR_RS17105 0.15 -3.2
593,571 - AZOBR_RS17105 0.15 -0.3
593,571 - AZOBR_RS17105 0.15 +0.3
593,702 + AZOBR_RS17105 0.26 -1.4
593,873 + AZOBR_RS17105 0.40 +0.6
593,873 + AZOBR_RS17105 0.40 +0.8
593,873 + AZOBR_RS17105 0.40 -0.5
593,874 - AZOBR_RS17105 0.40 +1.0
593,874 - AZOBR_RS17105 0.40 -2.5
593,967 - AZOBR_RS17105 0.48 +0.8
594,086 + AZOBR_RS17105 0.58 -1.0
594,086 + AZOBR_RS17105 0.58 +1.2
594,086 + AZOBR_RS17105 0.58 +0.4
594,086 + AZOBR_RS17105 0.58 -0.4
594,087 - AZOBR_RS17105 0.58 -1.0
594,113 + AZOBR_RS17105 0.60 +0.3
594,113 + AZOBR_RS17105 0.60 +0.6
594,113 + AZOBR_RS17105 0.60 +0.7
594,114 - AZOBR_RS17105 0.60 -1.6
594,116 + AZOBR_RS17105 0.60 -0.7
594,116 + AZOBR_RS17105 0.60 -2.4
594,117 - AZOBR_RS17105 0.60 -1.0
594,117 - AZOBR_RS17105 0.60 -1.2
594,117 - AZOBR_RS17105 0.60 -0.1

Or see this region's nucleotide sequence