Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06030

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06020 and AZOBR_RS06025 are separated by 148 nucleotidesAZOBR_RS06025 and AZOBR_RS06030 are separated by 119 nucleotidesAZOBR_RS06030 and AZOBR_RS06035 are separated by 92 nucleotidesAZOBR_RS06035 and AZOBR_RS06040 are separated by 19 nucleotidesAZOBR_RS06040 and AZOBR_RS06045 are separated by 9 nucleotides AZOBR_RS06020: AZOBR_RS06020 - tRNA-Tyr, at 1,280,312 to 1,280,397 _RS06020 AZOBR_RS06025: AZOBR_RS06025 - hydrogenase, at 1,280,546 to 1,281,172 _RS06025 AZOBR_RS06030: AZOBR_RS06030 - carbon monoxide dehydrogenase, at 1,281,292 to 1,281,735 _RS06030 AZOBR_RS06035: AZOBR_RS06035 - hypothetical protein, at 1,281,828 to 1,282,247 _RS06035 AZOBR_RS06040: AZOBR_RS06040 - membrane protein, at 1,282,267 to 1,282,656 _RS06040 AZOBR_RS06045: AZOBR_RS06045 - murein transglycosylase, at 1,282,666 to 1,283,976 _RS06045 Position (kb) 1281 1282Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1280.342 kb on - strand, within AZOBR_RS06020at 1280.473 kb on + strandat 1280.473 kb on + strandat 1280.478 kb on - strandat 1280.933 kb on - strand, within AZOBR_RS06025at 1280.934 kb on + strand, within AZOBR_RS06025at 1281.515 kb on + strand, within AZOBR_RS06030at 1281.515 kb on + strand, within AZOBR_RS06030at 1281.515 kb on + strand, within AZOBR_RS06030at 1281.515 kb on + strand, within AZOBR_RS06030at 1281.516 kb on - strand, within AZOBR_RS06030at 1281.516 kb on - strand, within AZOBR_RS06030at 1281.516 kb on - strand, within AZOBR_RS06030at 1281.516 kb on - strand, within AZOBR_RS06030at 1281.516 kb on - strand, within AZOBR_RS06030at 1281.605 kb on + strand, within AZOBR_RS06030at 1281.605 kb on + strand, within AZOBR_RS06030at 1281.606 kb on - strand, within AZOBR_RS06030at 1281.777 kb on + strandat 1281.777 kb on + strandat 1281.777 kb on + strandat 1281.777 kb on + strandat 1281.777 kb on + strandat 1281.778 kb on - strandat 1281.778 kb on - strandat 1282.059 kb on + strand, within AZOBR_RS06035at 1282.060 kb on - strand, within AZOBR_RS06035at 1282.182 kb on + strand, within AZOBR_RS06035at 1282.182 kb on + strand, within AZOBR_RS06035at 1282.182 kb on + strand, within AZOBR_RS06035at 1282.182 kb on + strand, within AZOBR_RS06035at 1282.182 kb on + strand, within AZOBR_RS06035at 1282.182 kb on + strand, within AZOBR_RS06035at 1282.183 kb on - strand, within AZOBR_RS06035at 1282.183 kb on - strand, within AZOBR_RS06035at 1282.183 kb on - strand, within AZOBR_RS06035at 1282.183 kb on - strand, within AZOBR_RS06035at 1282.183 kb on - strand, within AZOBR_RS06035at 1282.290 kb on - strandat 1282.361 kb on + strand, within AZOBR_RS06040at 1282.361 kb on + strand, within AZOBR_RS06040at 1282.362 kb on - strand, within AZOBR_RS06040at 1282.482 kb on - strand, within AZOBR_RS06040at 1282.565 kb on + strand, within AZOBR_RS06040at 1282.566 kb on - strand, within AZOBR_RS06040at 1282.598 kb on + strand, within AZOBR_RS06040at 1282.598 kb on + strand, within AZOBR_RS06040at 1282.599 kb on - strand, within AZOBR_RS06040at 1282.599 kb on - strand, within AZOBR_RS06040

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,280,342 - AZOBR_RS06020 0.35 +0.1
1,280,473 + +1.0
1,280,473 + -2.1
1,280,478 - +1.4
1,280,933 - AZOBR_RS06025 0.62 -0.8
1,280,934 + AZOBR_RS06025 0.62 +0.2
1,281,515 + AZOBR_RS06030 0.50 -1.6
1,281,515 + AZOBR_RS06030 0.50 +0.3
1,281,515 + AZOBR_RS06030 0.50 +0.9
1,281,515 + AZOBR_RS06030 0.50 +0.4
1,281,516 - AZOBR_RS06030 0.50 -2.6
1,281,516 - AZOBR_RS06030 0.50 -2.2
1,281,516 - AZOBR_RS06030 0.50 +0.9
1,281,516 - AZOBR_RS06030 0.50 +0.8
1,281,516 - AZOBR_RS06030 0.50 +0.9
1,281,605 + AZOBR_RS06030 0.70 -2.4
1,281,605 + AZOBR_RS06030 0.70 -0.7
1,281,606 - AZOBR_RS06030 0.71 +2.8
1,281,777 + +0.8
1,281,777 + -0.3
1,281,777 + +0.1
1,281,777 + -2.1
1,281,777 + +0.5
1,281,778 - -1.3
1,281,778 - +0.2
1,282,059 + AZOBR_RS06035 0.55 +0.1
1,282,060 - AZOBR_RS06035 0.55 +2.2
1,282,182 + AZOBR_RS06035 0.84 -0.5
1,282,182 + AZOBR_RS06035 0.84 -0.6
1,282,182 + AZOBR_RS06035 0.84 -0.5
1,282,182 + AZOBR_RS06035 0.84 +0.9
1,282,182 + AZOBR_RS06035 0.84 +1.2
1,282,182 + AZOBR_RS06035 0.84 +0.6
1,282,183 - AZOBR_RS06035 0.85 +1.1
1,282,183 - AZOBR_RS06035 0.85 -0.4
1,282,183 - AZOBR_RS06035 0.85 -0.8
1,282,183 - AZOBR_RS06035 0.85 +1.5
1,282,183 - AZOBR_RS06035 0.85 -1.1
1,282,290 - +0.4
1,282,361 + AZOBR_RS06040 0.24 +0.1
1,282,361 + AZOBR_RS06040 0.24 -0.1
1,282,362 - AZOBR_RS06040 0.24 -0.9
1,282,482 - AZOBR_RS06040 0.55 -1.9
1,282,565 + AZOBR_RS06040 0.76 +1.3
1,282,566 - AZOBR_RS06040 0.77 +0.1
1,282,598 + AZOBR_RS06040 0.85 +1.1
1,282,598 + AZOBR_RS06040 0.85 +1.2
1,282,599 - AZOBR_RS06040 0.85 +0.8
1,282,599 - AZOBR_RS06040 0.85 -0.3

Or see this region's nucleotide sequence