Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22740 and ABZR87_RS22745 are separated by 16 nucleotides ABZR87_RS22745 and ABZR87_RS22750 are separated by 46 nucleotides ABZR87_RS22750 and ABZR87_RS22755 overlap by 20 nucleotides
ABZR87_RS22740: ABZR87_RS22740 - MFS transporter, at 1,460,657 to 1,462,018
_RS22740
ABZR87_RS22745: ABZR87_RS22745 - MBL fold metallo-hydrolase, at 1,462,035 to 1,462,928
_RS22745
ABZR87_RS22750: ABZR87_RS22750 - response regulator transcription factor, at 1,462,975 to 1,463,961
_RS22750
ABZR87_RS22755: ABZR87_RS22755 - ATP-binding protein, at 1,463,942 to 1,467,340
_RS22755
Position (kb) 1462
1463
1464 Strain fitness (log2 ratio) -1
0
1
2 at 1461.975 kb on - strand at 1461.975 kb on - strand at 1461.975 kb on - strand at 1461.975 kb on - strand at 1461.975 kb on - strand at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.662 kb on - strand, within ABZR87_RS22745 at 1462.662 kb on - strand, within ABZR87_RS22745 at 1462.662 kb on - strand, within ABZR87_RS22745 at 1462.737 kb on + strand, within ABZR87_RS22745 at 1462.737 kb on + strand, within ABZR87_RS22745 at 1462.737 kb on + strand, within ABZR87_RS22745 at 1462.908 kb on + strand at 1462.908 kb on + strand at 1462.932 kb on + strand at 1463.351 kb on - strand, within ABZR87_RS22750 at 1463.848 kb on - strand, within ABZR87_RS22750 at 1463.986 kb on + strand at 1464.103 kb on - strand at 1464.276 kb on + strand at 1464.276 kb on + strand at 1464.277 kb on - strand at 1464.277 kb on - strand at 1464.529 kb on + strand, within ABZR87_RS22755 at 1464.656 kb on - strand, within ABZR87_RS22755 at 1464.656 kb on - strand, within ABZR87_RS22755 at 1464.664 kb on + strand, within ABZR87_RS22755 at 1464.665 kb on - strand, within ABZR87_RS22755 at 1464.870 kb on + strand, within ABZR87_RS22755 at 1464.871 kb on - strand, within ABZR87_RS22755
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 1,461,975 - -0.5 1,461,975 - +0.0 1,461,975 - -0.0 1,461,975 - -1.3 1,461,975 - -1.1 1,462,383 + ABZR87_RS22745 0.39 +0.1 1,462,383 + ABZR87_RS22745 0.39 +0.3 1,462,383 + ABZR87_RS22745 0.39 -0.1 1,462,383 + ABZR87_RS22745 0.39 +0.1 1,462,384 - ABZR87_RS22745 0.39 -0.4 1,462,384 - ABZR87_RS22745 0.39 -0.0 1,462,384 - ABZR87_RS22745 0.39 -1.2 1,462,384 - ABZR87_RS22745 0.39 +0.8 1,462,384 - ABZR87_RS22745 0.39 -0.3 1,462,384 - ABZR87_RS22745 0.39 -0.1 1,462,384 - ABZR87_RS22745 0.39 -0.4 1,462,476 + ABZR87_RS22745 0.49 +1.3 1,462,476 + ABZR87_RS22745 0.49 -0.0 1,462,476 + ABZR87_RS22745 0.49 +0.4 1,462,476 + ABZR87_RS22745 0.49 +0.1 1,462,476 + ABZR87_RS22745 0.49 +1.4 1,462,476 + ABZR87_RS22745 0.49 +0.5 1,462,476 + ABZR87_RS22745 0.49 +0.6 1,462,477 - ABZR87_RS22745 0.49 -0.3 1,462,477 - ABZR87_RS22745 0.49 +2.0 1,462,477 - ABZR87_RS22745 0.49 -0.0 1,462,477 - ABZR87_RS22745 0.49 +1.9 1,462,662 - ABZR87_RS22745 0.70 +0.7 1,462,662 - ABZR87_RS22745 0.70 -1.4 1,462,662 - ABZR87_RS22745 0.70 -1.4 1,462,737 + ABZR87_RS22745 0.79 -0.0 1,462,737 + ABZR87_RS22745 0.79 +0.5 1,462,737 + ABZR87_RS22745 0.79 +0.4 1,462,908 + -0.6 1,462,908 + +0.0 1,462,932 + +0.6 1,463,351 - ABZR87_RS22750 0.38 +0.8 1,463,848 - ABZR87_RS22750 0.88 +0.2 1,463,986 + +2.0 1,464,103 - -1.1 1,464,276 + -0.6 1,464,276 + +0.5 1,464,277 - -0.4 1,464,277 - +0.2 1,464,529 + ABZR87_RS22755 0.17 -0.3 1,464,656 - ABZR87_RS22755 0.21 +0.6 1,464,656 - ABZR87_RS22755 0.21 -0.5 1,464,664 + ABZR87_RS22755 0.21 -1.3 1,464,665 - ABZR87_RS22755 0.21 +0.6 1,464,870 + ABZR87_RS22755 0.27 -0.1 1,464,871 - ABZR87_RS22755 0.27 -0.1
Or see this region's nucleotide sequence