Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22515

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22510 and ABZR87_RS22515 are separated by 173 nucleotidesABZR87_RS22515 and ABZR87_RS22520 are separated by 148 nucleotidesABZR87_RS22520 and ABZR87_RS22525 are separated by 117 nucleotides ABZR87_RS22510: ABZR87_RS22510 - alpha/beta hydrolase, at 1,408,086 to 1,408,994 _RS22510 ABZR87_RS22515: ABZR87_RS22515 - nitronate monooxygenase family protein, at 1,409,168 to 1,410,238 _RS22515 ABZR87_RS22520: ABZR87_RS22520 - ABATE domain-containing protein, at 1,410,387 to 1,410,968 _RS22520 ABZR87_RS22525: ABZR87_RS22525 - 3-oxoacyl-ACP reductase family protein, at 1,411,086 to 1,411,859 _RS22525 Position (kb) 1409 1410 1411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1408.288 kb on + strand, within ABZR87_RS22510at 1408.289 kb on - strand, within ABZR87_RS22510at 1408.306 kb on + strand, within ABZR87_RS22510at 1408.307 kb on - strand, within ABZR87_RS22510at 1408.381 kb on + strand, within ABZR87_RS22510at 1408.441 kb on + strand, within ABZR87_RS22510at 1408.441 kb on + strand, within ABZR87_RS22510at 1408.441 kb on + strand, within ABZR87_RS22510at 1408.441 kb on + strand, within ABZR87_RS22510at 1408.516 kb on + strand, within ABZR87_RS22510at 1408.517 kb on - strand, within ABZR87_RS22510at 1408.654 kb on + strand, within ABZR87_RS22510at 1408.654 kb on + strand, within ABZR87_RS22510at 1408.655 kb on - strand, within ABZR87_RS22510at 1408.689 kb on - strand, within ABZR87_RS22510at 1408.790 kb on - strand, within ABZR87_RS22510at 1408.791 kb on - strand, within ABZR87_RS22510at 1408.826 kb on + strand, within ABZR87_RS22510at 1408.826 kb on + strand, within ABZR87_RS22510at 1408.826 kb on + strand, within ABZR87_RS22510at 1408.826 kb on + strand, within ABZR87_RS22510at 1408.826 kb on + strand, within ABZR87_RS22510at 1408.826 kb on + strand, within ABZR87_RS22510at 1408.827 kb on - strand, within ABZR87_RS22510at 1408.827 kb on - strand, within ABZR87_RS22510at 1408.827 kb on - strand, within ABZR87_RS22510at 1408.895 kb on - strand, within ABZR87_RS22510at 1408.905 kb on + strandat 1408.905 kb on + strandat 1408.906 kb on - strandat 1408.906 kb on - strandat 1408.906 kb on - strandat 1408.906 kb on - strandat 1408.906 kb on - strandat 1408.951 kb on + strandat 1408.952 kb on - strandat 1409.505 kb on + strand, within ABZR87_RS22515at 1409.505 kb on + strand, within ABZR87_RS22515at 1409.505 kb on + strand, within ABZR87_RS22515at 1409.506 kb on - strand, within ABZR87_RS22515at 1409.506 kb on - strand, within ABZR87_RS22515at 1409.720 kb on + strand, within ABZR87_RS22515at 1409.720 kb on + strand, within ABZR87_RS22515at 1409.721 kb on - strand, within ABZR87_RS22515at 1409.721 kb on - strand, within ABZR87_RS22515at 1409.946 kb on + strand, within ABZR87_RS22515at 1409.949 kb on + strand, within ABZR87_RS22515at 1409.950 kb on - strand, within ABZR87_RS22515at 1409.950 kb on - strand, within ABZR87_RS22515at 1410.055 kb on - strand, within ABZR87_RS22515at 1410.274 kb on + strandat 1410.342 kb on - strandat 1410.581 kb on - strand, within ABZR87_RS22520at 1410.581 kb on - strand, within ABZR87_RS22520at 1410.871 kb on - strand, within ABZR87_RS22520at 1411.228 kb on - strand, within ABZR87_RS22525at 1411.228 kb on - strand, within ABZR87_RS22525at 1411.228 kb on - strand, within ABZR87_RS22525

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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1,408,288 + ABZR87_RS22510 0.22 -1.7
1,408,289 - ABZR87_RS22510 0.22 -2.2
1,408,306 + ABZR87_RS22510 0.24 +1.4
1,408,307 - ABZR87_RS22510 0.24 -0.8
1,408,381 + ABZR87_RS22510 0.32 -1.8
1,408,441 + ABZR87_RS22510 0.39 -0.1
1,408,441 + ABZR87_RS22510 0.39 -0.4
1,408,441 + ABZR87_RS22510 0.39 +0.7
1,408,441 + ABZR87_RS22510 0.39 -0.4
1,408,516 + ABZR87_RS22510 0.47 +0.4
1,408,517 - ABZR87_RS22510 0.47 -1.1
1,408,654 + ABZR87_RS22510 0.62 +1.1
1,408,654 + ABZR87_RS22510 0.62 -0.3
1,408,655 - ABZR87_RS22510 0.63 +0.2
1,408,689 - ABZR87_RS22510 0.66 +0.5
1,408,790 - ABZR87_RS22510 0.77 +0.7
1,408,791 - ABZR87_RS22510 0.78 -0.6
1,408,826 + ABZR87_RS22510 0.81 +1.6
1,408,826 + ABZR87_RS22510 0.81 -3.2
1,408,826 + ABZR87_RS22510 0.81 -0.2
1,408,826 + ABZR87_RS22510 0.81 -0.8
1,408,826 + ABZR87_RS22510 0.81 +0.8
1,408,826 + ABZR87_RS22510 0.81 -0.1
1,408,827 - ABZR87_RS22510 0.82 +2.0
1,408,827 - ABZR87_RS22510 0.82 -0.4
1,408,827 - ABZR87_RS22510 0.82 +0.5
1,408,895 - ABZR87_RS22510 0.89 +0.8
1,408,905 + -0.4
1,408,905 + -0.4
1,408,906 - -0.8
1,408,906 - -0.1
1,408,906 - -1.1
1,408,906 - +0.1
1,408,906 - +0.1
1,408,951 + +1.8
1,408,952 - -2.0
1,409,505 + ABZR87_RS22515 0.31 -1.5
1,409,505 + ABZR87_RS22515 0.31 -1.4
1,409,505 + ABZR87_RS22515 0.31 +0.1
1,409,506 - ABZR87_RS22515 0.32 -0.7
1,409,506 - ABZR87_RS22515 0.32 -0.8
1,409,720 + ABZR87_RS22515 0.52 +0.5
1,409,720 + ABZR87_RS22515 0.52 -1.0
1,409,721 - ABZR87_RS22515 0.52 -1.2
1,409,721 - ABZR87_RS22515 0.52 -2.7
1,409,946 + ABZR87_RS22515 0.73 -0.4
1,409,949 + ABZR87_RS22515 0.73 -0.2
1,409,950 - ABZR87_RS22515 0.73 -1.4
1,409,950 - ABZR87_RS22515 0.73 -1.1
1,410,055 - ABZR87_RS22515 0.83 +0.4
1,410,274 + +0.4
1,410,342 - +2.0
1,410,581 - ABZR87_RS22520 0.33 -0.5
1,410,581 - ABZR87_RS22520 0.33 +0.2
1,410,871 - ABZR87_RS22520 0.83 +1.0
1,411,228 - ABZR87_RS22525 0.18 -0.8
1,411,228 - ABZR87_RS22525 0.18 +0.2
1,411,228 - ABZR87_RS22525 0.18 +1.8

Or see this region's nucleotide sequence