Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21675

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21670 and ABZR87_RS21675 are separated by 32 nucleotidesABZR87_RS21675 and ABZR87_RS21680 are separated by 229 nucleotidesABZR87_RS21680 and ABZR87_RS21685 are separated by 41 nucleotides ABZR87_RS21670: ABZR87_RS21670 - 2-hydroxyacid dehydrogenase, at 1,246,721 to 1,247,653 _RS21670 ABZR87_RS21675: ABZR87_RS21675 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,247,686 to 1,248,942 _RS21675 ABZR87_RS21680: ABZR87_RS21680 - TetR/AcrR family transcriptional regulator, at 1,249,172 to 1,249,837 _RS21680 ABZR87_RS21685: ABZR87_RS21685 - MFS transporter, at 1,249,879 to 1,251,324 _RS21685 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1246.690 kb on + strandat 1247.140 kb on - strand, within ABZR87_RS21670at 1247.140 kb on - strand, within ABZR87_RS21670at 1247.140 kb on - strand, within ABZR87_RS21670at 1247.261 kb on + strand, within ABZR87_RS21670at 1247.261 kb on + strand, within ABZR87_RS21670at 1247.261 kb on + strand, within ABZR87_RS21670at 1247.262 kb on - strand, within ABZR87_RS21670at 1247.268 kb on - strand, within ABZR87_RS21670at 1247.390 kb on + strand, within ABZR87_RS21670at 1247.391 kb on - strand, within ABZR87_RS21670at 1247.426 kb on - strand, within ABZR87_RS21670at 1247.486 kb on + strand, within ABZR87_RS21670at 1247.486 kb on + strand, within ABZR87_RS21670at 1247.486 kb on + strand, within ABZR87_RS21670at 1247.486 kb on + strand, within ABZR87_RS21670at 1247.487 kb on - strand, within ABZR87_RS21670at 1247.487 kb on - strand, within ABZR87_RS21670at 1247.487 kb on - strand, within ABZR87_RS21670at 1247.487 kb on - strand, within ABZR87_RS21670at 1247.687 kb on + strandat 1247.688 kb on - strandat 1247.688 kb on - strandat 1247.768 kb on + strandat 1247.789 kb on + strandat 1247.790 kb on - strandat 1247.790 kb on - strandat 1247.790 kb on - strandat 1247.790 kb on - strandat 1247.831 kb on + strand, within ABZR87_RS21675at 1247.831 kb on + strand, within ABZR87_RS21675at 1247.831 kb on + strand, within ABZR87_RS21675at 1247.831 kb on + strand, within ABZR87_RS21675at 1247.832 kb on - strand, within ABZR87_RS21675at 1247.832 kb on - strand, within ABZR87_RS21675at 1247.832 kb on - strand, within ABZR87_RS21675at 1247.832 kb on - strand, within ABZR87_RS21675at 1247.984 kb on + strand, within ABZR87_RS21675at 1247.984 kb on + strand, within ABZR87_RS21675at 1247.984 kb on + strand, within ABZR87_RS21675at 1247.985 kb on - strand, within ABZR87_RS21675at 1247.985 kb on - strand, within ABZR87_RS21675at 1247.985 kb on - strand, within ABZR87_RS21675at 1248.014 kb on + strand, within ABZR87_RS21675at 1248.014 kb on + strand, within ABZR87_RS21675at 1248.015 kb on - strand, within ABZR87_RS21675at 1248.015 kb on - strand, within ABZR87_RS21675at 1248.015 kb on - strand, within ABZR87_RS21675at 1248.078 kb on - strand, within ABZR87_RS21675at 1248.146 kb on + strand, within ABZR87_RS21675at 1248.146 kb on + strand, within ABZR87_RS21675at 1248.146 kb on + strand, within ABZR87_RS21675at 1248.146 kb on + strand, within ABZR87_RS21675at 1248.147 kb on - strand, within ABZR87_RS21675at 1248.149 kb on + strand, within ABZR87_RS21675at 1248.149 kb on + strand, within ABZR87_RS21675at 1248.150 kb on - strand, within ABZR87_RS21675at 1248.150 kb on - strand, within ABZR87_RS21675at 1248.150 kb on - strand, within ABZR87_RS21675at 1248.150 kb on - strand, within ABZR87_RS21675at 1248.150 kb on - strand, within ABZR87_RS21675at 1248.153 kb on + strand, within ABZR87_RS21675at 1248.153 kb on + strand, within ABZR87_RS21675at 1248.153 kb on + strand, within ABZR87_RS21675at 1248.154 kb on - strand, within ABZR87_RS21675at 1248.154 kb on - strand, within ABZR87_RS21675at 1248.154 kb on - strand, within ABZR87_RS21675at 1248.155 kb on + strand, within ABZR87_RS21675at 1248.155 kb on + strand, within ABZR87_RS21675at 1248.155 kb on + strand, within ABZR87_RS21675at 1248.156 kb on - strand, within ABZR87_RS21675at 1248.156 kb on - strand, within ABZR87_RS21675at 1248.156 kb on - strand, within ABZR87_RS21675at 1248.168 kb on + strand, within ABZR87_RS21675at 1248.168 kb on + strand, within ABZR87_RS21675at 1248.269 kb on + strand, within ABZR87_RS21675at 1248.270 kb on - strand, within ABZR87_RS21675at 1248.270 kb on - strand, within ABZR87_RS21675at 1248.270 kb on - strand, within ABZR87_RS21675at 1248.270 kb on - strand, within ABZR87_RS21675at 1248.350 kb on + strand, within ABZR87_RS21675at 1248.351 kb on - strand, within ABZR87_RS21675at 1248.351 kb on - strand, within ABZR87_RS21675at 1248.389 kb on + strand, within ABZR87_RS21675at 1248.389 kb on + strand, within ABZR87_RS21675at 1248.390 kb on - strand, within ABZR87_RS21675at 1248.407 kb on + strand, within ABZR87_RS21675at 1248.407 kb on + strand, within ABZR87_RS21675at 1248.408 kb on - strand, within ABZR87_RS21675at 1248.408 kb on - strand, within ABZR87_RS21675at 1248.408 kb on - strand, within ABZR87_RS21675at 1248.440 kb on + strand, within ABZR87_RS21675at 1248.440 kb on + strand, within ABZR87_RS21675at 1248.441 kb on - strand, within ABZR87_RS21675at 1248.441 kb on - strand, within ABZR87_RS21675at 1248.497 kb on + strand, within ABZR87_RS21675at 1248.497 kb on + strand, within ABZR87_RS21675at 1248.539 kb on + strand, within ABZR87_RS21675at 1248.539 kb on + strand, within ABZR87_RS21675at 1248.540 kb on - strand, within ABZR87_RS21675at 1248.540 kb on - strand, within ABZR87_RS21675at 1248.540 kb on - strand, within ABZR87_RS21675at 1248.548 kb on + strand, within ABZR87_RS21675at 1248.548 kb on + strand, within ABZR87_RS21675at 1248.549 kb on - strand, within ABZR87_RS21675at 1248.549 kb on - strand, within ABZR87_RS21675at 1248.549 kb on - strand, within ABZR87_RS21675at 1248.581 kb on + strand, within ABZR87_RS21675at 1248.581 kb on + strand, within ABZR87_RS21675at 1248.581 kb on + strand, within ABZR87_RS21675at 1248.581 kb on + strand, within ABZR87_RS21675at 1248.582 kb on - strand, within ABZR87_RS21675at 1248.582 kb on - strand, within ABZR87_RS21675at 1248.582 kb on - strand, within ABZR87_RS21675at 1248.582 kb on - strand, within ABZR87_RS21675at 1248.642 kb on - strand, within ABZR87_RS21675at 1248.964 kb on - strandat 1248.969 kb on + strandat 1248.969 kb on + strandat 1249.062 kb on - strandat 1249.073 kb on - strandat 1249.084 kb on + strandat 1249.084 kb on + strandat 1249.129 kb on + strandat 1249.130 kb on - strandat 1249.158 kb on + strandat 1249.158 kb on + strandat 1249.159 kb on - strandat 1249.159 kb on - strandat 1249.377 kb on - strand, within ABZR87_RS21680at 1249.631 kb on + strand, within ABZR87_RS21680at 1249.631 kb on + strand, within ABZR87_RS21680at 1249.631 kb on + strand, within ABZR87_RS21680at 1249.632 kb on - strand, within ABZR87_RS21680at 1249.632 kb on - strand, within ABZR87_RS21680at 1249.632 kb on - strand, within ABZR87_RS21680at 1249.634 kb on + strand, within ABZR87_RS21680at 1249.634 kb on + strand, within ABZR87_RS21680at 1249.634 kb on + strand, within ABZR87_RS21680at 1249.635 kb on - strand, within ABZR87_RS21680at 1249.635 kb on - strand, within ABZR87_RS21680at 1249.635 kb on - strand, within ABZR87_RS21680at 1249.635 kb on - strand, within ABZR87_RS21680at 1249.635 kb on - strand, within ABZR87_RS21680at 1249.635 kb on - strand, within ABZR87_RS21680at 1249.700 kb on + strand, within ABZR87_RS21680at 1249.706 kb on + strand, within ABZR87_RS21680at 1249.706 kb on + strand, within ABZR87_RS21680at 1249.707 kb on - strand, within ABZR87_RS21680at 1249.707 kb on - strand, within ABZR87_RS21680at 1249.836 kb on - strandat 1249.836 kb on - strandat 1249.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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1,246,690 + +0.1
1,247,140 - ABZR87_RS21670 0.45 -0.0
1,247,140 - ABZR87_RS21670 0.45 +0.9
1,247,140 - ABZR87_RS21670 0.45 -2.0
1,247,261 + ABZR87_RS21670 0.58 -0.4
1,247,261 + ABZR87_RS21670 0.58 -0.3
1,247,261 + ABZR87_RS21670 0.58 +0.0
1,247,262 - ABZR87_RS21670 0.58 +0.1
1,247,268 - ABZR87_RS21670 0.59 +0.3
1,247,390 + ABZR87_RS21670 0.72 +0.5
1,247,391 - ABZR87_RS21670 0.72 -1.0
1,247,426 - ABZR87_RS21670 0.76 -0.7
1,247,486 + ABZR87_RS21670 0.82 +0.4
1,247,486 + ABZR87_RS21670 0.82 +2.7
1,247,486 + ABZR87_RS21670 0.82 +0.5
1,247,486 + ABZR87_RS21670 0.82 -0.4
1,247,487 - ABZR87_RS21670 0.82 -0.2
1,247,487 - ABZR87_RS21670 0.82 +0.8
1,247,487 - ABZR87_RS21670 0.82 -0.1
1,247,487 - ABZR87_RS21670 0.82 +0.6
1,247,687 + +0.9
1,247,688 - -0.4
1,247,688 - -0.3
1,247,768 + -3.3
1,247,789 + +0.7
1,247,790 - -2.9
1,247,790 - -1.5
1,247,790 - -0.3
1,247,790 - -0.1
1,247,831 + ABZR87_RS21675 0.12 -1.6
1,247,831 + ABZR87_RS21675 0.12 -0.8
1,247,831 + ABZR87_RS21675 0.12 -2.1
1,247,831 + ABZR87_RS21675 0.12 -1.5
1,247,832 - ABZR87_RS21675 0.12 -1.0
1,247,832 - ABZR87_RS21675 0.12 -1.0
1,247,832 - ABZR87_RS21675 0.12 -0.9
1,247,832 - ABZR87_RS21675 0.12 +0.6
1,247,984 + ABZR87_RS21675 0.24 -3.3
1,247,984 + ABZR87_RS21675 0.24 -0.9
1,247,984 + ABZR87_RS21675 0.24 -1.7
1,247,985 - ABZR87_RS21675 0.24 -3.3
1,247,985 - ABZR87_RS21675 0.24 +0.2
1,247,985 - ABZR87_RS21675 0.24 -2.0
1,248,014 + ABZR87_RS21675 0.26 +0.9
1,248,014 + ABZR87_RS21675 0.26 -0.8
1,248,015 - ABZR87_RS21675 0.26 -2.2
1,248,015 - ABZR87_RS21675 0.26 -0.9
1,248,015 - ABZR87_RS21675 0.26 -0.5
1,248,078 - ABZR87_RS21675 0.31 -0.1
1,248,146 + ABZR87_RS21675 0.37 -1.5
1,248,146 + ABZR87_RS21675 0.37 -2.8
1,248,146 + ABZR87_RS21675 0.37 -0.1
1,248,146 + ABZR87_RS21675 0.37 -0.6
1,248,147 - ABZR87_RS21675 0.37 -1.1
1,248,149 + ABZR87_RS21675 0.37 -0.6
1,248,149 + ABZR87_RS21675 0.37 -0.8
1,248,150 - ABZR87_RS21675 0.37 -1.0
1,248,150 - ABZR87_RS21675 0.37 -1.8
1,248,150 - ABZR87_RS21675 0.37 -2.2
1,248,150 - ABZR87_RS21675 0.37 -0.8
1,248,150 - ABZR87_RS21675 0.37 -1.1
1,248,153 + ABZR87_RS21675 0.37 -0.5
1,248,153 + ABZR87_RS21675 0.37 -1.3
1,248,153 + ABZR87_RS21675 0.37 -1.5
1,248,154 - ABZR87_RS21675 0.37 -2.4
1,248,154 - ABZR87_RS21675 0.37 -0.2
1,248,154 - ABZR87_RS21675 0.37 -0.6
1,248,155 + ABZR87_RS21675 0.37 +0.0
1,248,155 + ABZR87_RS21675 0.37 -0.5
1,248,155 + ABZR87_RS21675 0.37 -0.4
1,248,156 - ABZR87_RS21675 0.37 -0.3
1,248,156 - ABZR87_RS21675 0.37 -1.1
1,248,156 - ABZR87_RS21675 0.37 -0.4
1,248,168 + ABZR87_RS21675 0.38 -2.1
1,248,168 + ABZR87_RS21675 0.38 +0.1
1,248,269 + ABZR87_RS21675 0.46 -1.7
1,248,270 - ABZR87_RS21675 0.46 +0.1
1,248,270 - ABZR87_RS21675 0.46 -0.5
1,248,270 - ABZR87_RS21675 0.46 -0.5
1,248,270 - ABZR87_RS21675 0.46 -1.3
1,248,350 + ABZR87_RS21675 0.53 -1.8
1,248,351 - ABZR87_RS21675 0.53 -1.2
1,248,351 - ABZR87_RS21675 0.53 -3.1
1,248,389 + ABZR87_RS21675 0.56 -2.1
1,248,389 + ABZR87_RS21675 0.56 -1.0
1,248,390 - ABZR87_RS21675 0.56 -1.6
1,248,407 + ABZR87_RS21675 0.57 +0.0
1,248,407 + ABZR87_RS21675 0.57 +1.3
1,248,408 - ABZR87_RS21675 0.57 -3.1
1,248,408 - ABZR87_RS21675 0.57 -0.8
1,248,408 - ABZR87_RS21675 0.57 -1.7
1,248,440 + ABZR87_RS21675 0.60 -2.1
1,248,440 + ABZR87_RS21675 0.60 -1.1
1,248,441 - ABZR87_RS21675 0.60 -0.1
1,248,441 - ABZR87_RS21675 0.60 +0.2
1,248,497 + ABZR87_RS21675 0.65 -1.3
1,248,497 + ABZR87_RS21675 0.65 -3.0
1,248,539 + ABZR87_RS21675 0.68 -0.4
1,248,539 + ABZR87_RS21675 0.68 -1.7
1,248,540 - ABZR87_RS21675 0.68 +0.1
1,248,540 - ABZR87_RS21675 0.68 -1.8
1,248,540 - ABZR87_RS21675 0.68 -1.5
1,248,548 + ABZR87_RS21675 0.69 -0.9
1,248,548 + ABZR87_RS21675 0.69 +0.9
1,248,549 - ABZR87_RS21675 0.69 -1.5
1,248,549 - ABZR87_RS21675 0.69 -0.4
1,248,549 - ABZR87_RS21675 0.69 -0.4
1,248,581 + ABZR87_RS21675 0.71 -0.5
1,248,581 + ABZR87_RS21675 0.71 +0.2
1,248,581 + ABZR87_RS21675 0.71 -0.4
1,248,581 + ABZR87_RS21675 0.71 +0.3
1,248,582 - ABZR87_RS21675 0.71 -0.5
1,248,582 - ABZR87_RS21675 0.71 -0.7
1,248,582 - ABZR87_RS21675 0.71 -0.7
1,248,582 - ABZR87_RS21675 0.71 -1.3
1,248,642 - ABZR87_RS21675 0.76 -0.7
1,248,964 - +0.9
1,248,969 + -0.0
1,248,969 + -0.9
1,249,062 - -0.0
1,249,073 - -0.5
1,249,084 + +0.4
1,249,084 + -0.9
1,249,129 + +0.9
1,249,130 - -0.8
1,249,158 + +0.4
1,249,158 + -0.0
1,249,159 - +0.6
1,249,159 - +0.2
1,249,377 - ABZR87_RS21680 0.31 -0.0
1,249,631 + ABZR87_RS21680 0.69 +0.7
1,249,631 + ABZR87_RS21680 0.69 +0.1
1,249,631 + ABZR87_RS21680 0.69 -1.5
1,249,632 - ABZR87_RS21680 0.69 +0.5
1,249,632 - ABZR87_RS21680 0.69 +0.5
1,249,632 - ABZR87_RS21680 0.69 +0.5
1,249,634 + ABZR87_RS21680 0.69 +0.9
1,249,634 + ABZR87_RS21680 0.69 -0.5
1,249,634 + ABZR87_RS21680 0.69 -0.5
1,249,635 - ABZR87_RS21680 0.70 +0.5
1,249,635 - ABZR87_RS21680 0.70 +1.0
1,249,635 - ABZR87_RS21680 0.70 +1.0
1,249,635 - ABZR87_RS21680 0.70 +0.4
1,249,635 - ABZR87_RS21680 0.70 +1.6
1,249,635 - ABZR87_RS21680 0.70 +0.0
1,249,700 + ABZR87_RS21680 0.79 -1.0
1,249,706 + ABZR87_RS21680 0.80 +1.1
1,249,706 + ABZR87_RS21680 0.80 -0.2
1,249,707 - ABZR87_RS21680 0.80 +0.1
1,249,707 - ABZR87_RS21680 0.80 +0.7
1,249,836 - -3.3
1,249,836 - -0.9
1,249,836 - -0.9

Or see this region's nucleotide sequence