Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19795

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotidesABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotidesABZR87_RS19795 and ABZR87_RS19800 are separated by 80 nucleotides ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024 _RS19785 ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611 _RS19790 ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486 _RS19795 ABZR87_RS19800: ABZR87_RS19800 - VOC family protein, at 814,567 to 815,640 _RS19800 Position (kb) 812 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 811.793 kb on + strand, within ABZR87_RS19785at 811.794 kb on - strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.876 kb on + strand, within ABZR87_RS19785at 811.877 kb on - strand, within ABZR87_RS19785at 811.877 kb on - strand, within ABZR87_RS19785at 812.062 kb on - strandat 812.204 kb on + strand, within ABZR87_RS19790at 812.204 kb on + strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.244 kb on + strand, within ABZR87_RS19790at 812.244 kb on + strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.383 kb on + strand, within ABZR87_RS19790at 812.441 kb on + strand, within ABZR87_RS19790at 812.441 kb on + strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.445 kb on - strand, within ABZR87_RS19790at 812.445 kb on - strand, within ABZR87_RS19790at 812.501 kb on + strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.649 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.666 kb on - strandat 812.711 kb on + strandat 812.712 kb on - strandat 812.740 kb on + strandat 812.741 kb on - strandat 812.741 kb on - strandat 812.741 kb on - strandat 812.755 kb on + strandat 812.755 kb on + strandat 812.756 kb on - strandat 812.961 kb on - strand, within ABZR87_RS19795at 812.961 kb on - strand, within ABZR87_RS19795at 812.978 kb on + strand, within ABZR87_RS19795at 812.979 kb on - strand, within ABZR87_RS19795at 813.095 kb on + strand, within ABZR87_RS19795at 813.095 kb on + strand, within ABZR87_RS19795at 813.095 kb on + strand, within ABZR87_RS19795at 813.096 kb on - strand, within ABZR87_RS19795at 813.096 kb on - strand, within ABZR87_RS19795at 813.096 kb on - strand, within ABZR87_RS19795at 813.185 kb on + strand, within ABZR87_RS19795at 813.185 kb on + strand, within ABZR87_RS19795at 813.200 kb on + strand, within ABZR87_RS19795at 813.200 kb on + strand, within ABZR87_RS19795at 813.201 kb on - strand, within ABZR87_RS19795at 813.443 kb on + strand, within ABZR87_RS19795at 813.443 kb on + strand, within ABZR87_RS19795at 813.443 kb on + strand, within ABZR87_RS19795at 813.444 kb on - strand, within ABZR87_RS19795at 813.444 kb on - strand, within ABZR87_RS19795at 813.444 kb on - strand, within ABZR87_RS19795at 813.524 kb on + strand, within ABZR87_RS19795at 813.524 kb on + strand, within ABZR87_RS19795at 813.524 kb on + strand, within ABZR87_RS19795at 813.525 kb on - strand, within ABZR87_RS19795at 813.525 kb on - strand, within ABZR87_RS19795at 813.569 kb on + strand, within ABZR87_RS19795at 813.569 kb on + strand, within ABZR87_RS19795at 813.570 kb on - strand, within ABZR87_RS19795at 813.570 kb on - strand, within ABZR87_RS19795at 813.690 kb on - strand, within ABZR87_RS19795at 813.716 kb on + strand, within ABZR87_RS19795at 813.716 kb on + strand, within ABZR87_RS19795at 813.716 kb on + strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.717 kb on - strand, within ABZR87_RS19795at 813.734 kb on + strand, within ABZR87_RS19795at 813.734 kb on + strand, within ABZR87_RS19795at 813.735 kb on - strand, within ABZR87_RS19795at 813.735 kb on - strand, within ABZR87_RS19795at 813.735 kb on - strand, within ABZR87_RS19795at 813.791 kb on + strand, within ABZR87_RS19795at 813.792 kb on - strand, within ABZR87_RS19795at 813.894 kb on - strand, within ABZR87_RS19795at 813.911 kb on + strand, within ABZR87_RS19795at 813.911 kb on + strand, within ABZR87_RS19795at 813.935 kb on + strand, within ABZR87_RS19795at 813.935 kb on + strand, within ABZR87_RS19795at 813.935 kb on + strand, within ABZR87_RS19795at 814.044 kb on - strand, within ABZR87_RS19795at 814.215 kb on - strand, within ABZR87_RS19795at 814.215 kb on - strand, within ABZR87_RS19795at 814.215 kb on - strand, within ABZR87_RS19795at 814.296 kb on - strand, within ABZR87_RS19795at 814.437 kb on - strandat 814.482 kb on - strandat 814.482 kb on - strandat 814.731 kb on - strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.790 kb on + strand, within ABZR87_RS19800at 814.791 kb on - strand, within ABZR87_RS19800at 814.791 kb on - strand, within ABZR87_RS19800at 814.793 kb on + strand, within ABZR87_RS19800at 814.794 kb on - strand, within ABZR87_RS19800at 814.794 kb on - strand, within ABZR87_RS19800at 814.952 kb on + strand, within ABZR87_RS19800at 814.952 kb on + strand, within ABZR87_RS19800at 814.953 kb on - strand, within ABZR87_RS19800at 815.064 kb on - strand, within ABZR87_RS19800at 815.064 kb on - strand, within ABZR87_RS19800at 815.198 kb on + strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.199 kb on - strand, within ABZR87_RS19800at 815.271 kb on + strand, within ABZR87_RS19800at 815.367 kb on - strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800at 815.420 kb on + strand, within ABZR87_RS19800

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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811,793 + ABZR87_RS19785 0.80 +0.2
811,794 - ABZR87_RS19785 0.80 -0.3
811,861 + ABZR87_RS19785 0.86 +0.2
811,861 + ABZR87_RS19785 0.86 -0.3
811,861 + ABZR87_RS19785 0.86 -0.2
811,870 + ABZR87_RS19785 0.87 +0.1
811,870 + ABZR87_RS19785 0.87 -1.0
811,870 + ABZR87_RS19785 0.87 +0.7
811,871 - ABZR87_RS19785 0.87 -0.9
811,871 - ABZR87_RS19785 0.87 +0.4
811,871 - ABZR87_RS19785 0.87 -1.6
811,871 - ABZR87_RS19785 0.87 +0.5
811,871 - ABZR87_RS19785 0.87 +0.3
811,874 + ABZR87_RS19785 0.87 +0.7
811,874 + ABZR87_RS19785 0.87 -1.2
811,874 + ABZR87_RS19785 0.87 -0.1
811,874 + ABZR87_RS19785 0.87 -0.4
811,874 + ABZR87_RS19785 0.87 +0.1
811,875 - ABZR87_RS19785 0.87 +0.9
811,875 - ABZR87_RS19785 0.87 -0.5
811,875 - ABZR87_RS19785 0.87 -0.1
811,875 - ABZR87_RS19785 0.87 -0.2
811,875 - ABZR87_RS19785 0.87 +0.5
811,875 - ABZR87_RS19785 0.87 +0.5
811,876 + ABZR87_RS19785 0.87 +0.7
811,877 - ABZR87_RS19785 0.87 -0.7
811,877 - ABZR87_RS19785 0.87 -2.8
812,062 - -0.7
812,204 + ABZR87_RS19790 0.14 +0.4
812,204 + ABZR87_RS19790 0.14 -0.5
812,205 - ABZR87_RS19790 0.15 +0.7
812,205 - ABZR87_RS19790 0.15 +0.2
812,205 - ABZR87_RS19790 0.15 +0.3
812,205 - ABZR87_RS19790 0.15 +0.8
812,244 + ABZR87_RS19790 0.23 +1.3
812,244 + ABZR87_RS19790 0.23 -0.4
812,245 - ABZR87_RS19790 0.23 -2.6
812,245 - ABZR87_RS19790 0.23 -0.9
812,245 - ABZR87_RS19790 0.23 -0.2
812,383 + ABZR87_RS19790 0.52 +2.0
812,441 + ABZR87_RS19790 0.64 +1.1
812,441 + ABZR87_RS19790 0.64 -1.6
812,442 - ABZR87_RS19790 0.64 +0.7
812,442 - ABZR87_RS19790 0.64 -0.6
812,442 - ABZR87_RS19790 0.64 +0.8
812,442 - ABZR87_RS19790 0.64 -1.4
812,444 + ABZR87_RS19790 0.65 +0.3
812,444 + ABZR87_RS19790 0.65 -0.2
812,444 + ABZR87_RS19790 0.65 +2.0
812,444 + ABZR87_RS19790 0.65 +0.2
812,445 - ABZR87_RS19790 0.65 -0.5
812,445 - ABZR87_RS19790 0.65 +1.0
812,501 + ABZR87_RS19790 0.77 +0.3
812,502 - ABZR87_RS19790 0.77 +0.1
812,502 - ABZR87_RS19790 0.77 -0.4
812,502 - ABZR87_RS19790 0.77 +1.6
812,649 + -0.2
812,663 + -0.4
812,663 + +0.7
812,663 + -0.3
812,663 + -0.3
812,664 - +0.1
812,664 - +0.3
812,664 - +0.0
812,664 - -0.1
812,664 - +0.1
812,664 - -1.0
812,664 - +0.5
812,664 - -1.1
812,665 + +0.0
812,665 + +0.6
812,665 + -0.4
812,665 + +0.1
812,666 - +0.1
812,711 + +0.4
812,712 - +0.3
812,740 + +0.5
812,741 - -0.7
812,741 - +0.1
812,741 - +1.1
812,755 + +0.0
812,755 + +0.1
812,756 - +1.1
812,961 - ABZR87_RS19795 0.11 -0.4
812,961 - ABZR87_RS19795 0.11 -0.9
812,978 + ABZR87_RS19795 0.12 -0.0
812,979 - ABZR87_RS19795 0.12 +0.1
813,095 + ABZR87_RS19795 0.19 -0.6
813,095 + ABZR87_RS19795 0.19 +1.3
813,095 + ABZR87_RS19795 0.19 +0.3
813,096 - ABZR87_RS19795 0.19 +0.2
813,096 - ABZR87_RS19795 0.19 +0.4
813,096 - ABZR87_RS19795 0.19 -1.8
813,185 + ABZR87_RS19795 0.24 +0.2
813,185 + ABZR87_RS19795 0.24 +0.1
813,200 + ABZR87_RS19795 0.25 -0.2
813,200 + ABZR87_RS19795 0.25 +0.6
813,201 - ABZR87_RS19795 0.25 +0.4
813,443 + ABZR87_RS19795 0.39 +0.1
813,443 + ABZR87_RS19795 0.39 +0.3
813,443 + ABZR87_RS19795 0.39 +0.3
813,444 - ABZR87_RS19795 0.39 +0.0
813,444 - ABZR87_RS19795 0.39 -0.3
813,444 - ABZR87_RS19795 0.39 +0.4
813,524 + ABZR87_RS19795 0.44 -0.5
813,524 + ABZR87_RS19795 0.44 +0.3
813,524 + ABZR87_RS19795 0.44 +1.5
813,525 - ABZR87_RS19795 0.44 +0.2
813,525 - ABZR87_RS19795 0.44 +1.3
813,569 + ABZR87_RS19795 0.46 +0.2
813,569 + ABZR87_RS19795 0.46 +1.5
813,570 - ABZR87_RS19795 0.46 -0.4
813,570 - ABZR87_RS19795 0.46 +0.6
813,690 - ABZR87_RS19795 0.53 +1.1
813,716 + ABZR87_RS19795 0.55 +0.3
813,716 + ABZR87_RS19795 0.55 -0.3
813,716 + ABZR87_RS19795 0.55 -0.2
813,717 - ABZR87_RS19795 0.55 +0.6
813,717 - ABZR87_RS19795 0.55 +1.0
813,717 - ABZR87_RS19795 0.55 +0.1
813,717 - ABZR87_RS19795 0.55 +1.6
813,734 + ABZR87_RS19795 0.56 +0.3
813,734 + ABZR87_RS19795 0.56 -0.8
813,735 - ABZR87_RS19795 0.56 +0.4
813,735 - ABZR87_RS19795 0.56 -0.4
813,735 - ABZR87_RS19795 0.56 -0.3
813,791 + ABZR87_RS19795 0.59 +0.2
813,792 - ABZR87_RS19795 0.59 +0.7
813,894 - ABZR87_RS19795 0.65 +0.2
813,911 + ABZR87_RS19795 0.66 +1.0
813,911 + ABZR87_RS19795 0.66 +0.5
813,935 + ABZR87_RS19795 0.68 +0.1
813,935 + ABZR87_RS19795 0.68 +0.4
813,935 + ABZR87_RS19795 0.68 +2.1
814,044 - ABZR87_RS19795 0.74 -1.3
814,215 - ABZR87_RS19795 0.84 +1.5
814,215 - ABZR87_RS19795 0.84 -0.0
814,215 - ABZR87_RS19795 0.84 -1.0
814,296 - ABZR87_RS19795 0.89 +0.2
814,437 - +0.4
814,482 - +0.5
814,482 - -1.3
814,731 - ABZR87_RS19800 0.15 +0.3
814,790 + ABZR87_RS19800 0.21 +1.2
814,790 + ABZR87_RS19800 0.21 +0.4
814,790 + ABZR87_RS19800 0.21 -0.0
814,790 + ABZR87_RS19800 0.21 +0.3
814,790 + ABZR87_RS19800 0.21 -0.4
814,790 + ABZR87_RS19800 0.21 -0.0
814,791 - ABZR87_RS19800 0.21 +1.4
814,791 - ABZR87_RS19800 0.21 -0.5
814,793 + ABZR87_RS19800 0.21 +0.4
814,794 - ABZR87_RS19800 0.21 -0.5
814,794 - ABZR87_RS19800 0.21 -0.2
814,952 + ABZR87_RS19800 0.36 -0.6
814,952 + ABZR87_RS19800 0.36 -0.6
814,953 - ABZR87_RS19800 0.36 +0.8
815,064 - ABZR87_RS19800 0.46 -1.4
815,064 - ABZR87_RS19800 0.46 +0.7
815,198 + ABZR87_RS19800 0.59 +1.4
815,199 - ABZR87_RS19800 0.59 -0.2
815,199 - ABZR87_RS19800 0.59 -0.2
815,199 - ABZR87_RS19800 0.59 +0.1
815,199 - ABZR87_RS19800 0.59 +0.4
815,199 - ABZR87_RS19800 0.59 -0.0
815,271 + ABZR87_RS19800 0.66 -0.2
815,367 - ABZR87_RS19800 0.74 +0.9
815,420 + ABZR87_RS19800 0.79 +0.5
815,420 + ABZR87_RS19800 0.79 +0.6
815,420 + ABZR87_RS19800 0.79 +0.1
815,420 + ABZR87_RS19800 0.79 +0.8

Or see this region's nucleotide sequence