Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17495

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17490 and ABZR87_RS17495 are separated by 27 nucleotidesABZR87_RS17495 and ABZR87_RS17500 are separated by 332 nucleotides ABZR87_RS17490: ABZR87_RS17490 - phospholipase D-like domain-containing protein, at 283,787 to 285,556 _RS17490 ABZR87_RS17495: ABZR87_RS17495 - acyl-CoA synthetase, at 285,584 to 287,077 _RS17495 ABZR87_RS17500: ABZR87_RS17500 - molybdopterin cofactor-binding domain-containing protein, at 287,410 to 290,244 _RS17500 Position (kb) 285 286 287 288Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 284.708 kb on + strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.708 kb on + strand, within ABZR87_RS17490at 284.709 kb on - strand, within ABZR87_RS17490at 284.709 kb on - strand, within ABZR87_RS17490at 284.759 kb on + strand, within ABZR87_RS17490at 284.759 kb on + strand, within ABZR87_RS17490at 284.759 kb on + strand, within ABZR87_RS17490at 284.760 kb on - strand, within ABZR87_RS17490at 284.760 kb on - strand, within ABZR87_RS17490at 284.893 kb on + strand, within ABZR87_RS17490at 284.986 kb on - strand, within ABZR87_RS17490at 285.335 kb on + strand, within ABZR87_RS17490at 285.336 kb on - strand, within ABZR87_RS17490at 285.336 kb on - strand, within ABZR87_RS17490at 285.360 kb on - strand, within ABZR87_RS17490at 285.476 kb on + strandat 285.585 kb on + strandat 285.585 kb on + strandat 285.586 kb on - strandat 285.586 kb on - strandat 285.588 kb on - strandat 285.793 kb on - strand, within ABZR87_RS17495at 285.793 kb on - strand, within ABZR87_RS17495at 285.873 kb on + strand, within ABZR87_RS17495at 285.924 kb on + strand, within ABZR87_RS17495at 285.924 kb on + strand, within ABZR87_RS17495at 285.924 kb on + strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 285.925 kb on - strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.050 kb on + strand, within ABZR87_RS17495at 286.051 kb on - strand, within ABZR87_RS17495at 286.051 kb on - strand, within ABZR87_RS17495at 286.051 kb on - strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.203 kb on + strand, within ABZR87_RS17495at 286.204 kb on - strand, within ABZR87_RS17495at 286.212 kb on + strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.213 kb on - strand, within ABZR87_RS17495at 286.308 kb on + strand, within ABZR87_RS17495at 286.309 kb on - strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.350 kb on + strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.351 kb on - strand, within ABZR87_RS17495at 286.368 kb on + strand, within ABZR87_RS17495at 286.375 kb on + strand, within ABZR87_RS17495at 286.495 kb on - strand, within ABZR87_RS17495at 286.646 kb on - strand, within ABZR87_RS17495at 286.647 kb on + strand, within ABZR87_RS17495at 286.648 kb on - strand, within ABZR87_RS17495at 286.648 kb on - strand, within ABZR87_RS17495at 286.686 kb on + strand, within ABZR87_RS17495at 286.687 kb on - strand, within ABZR87_RS17495at 286.716 kb on + strand, within ABZR87_RS17495at 286.820 kb on + strand, within ABZR87_RS17495at 286.820 kb on + strand, within ABZR87_RS17495at 286.893 kb on + strand, within ABZR87_RS17495at 286.894 kb on - strand, within ABZR87_RS17495at 286.894 kb on - strand, within ABZR87_RS17495at 286.933 kb on - strandat 286.933 kb on - strandat 287.237 kb on + strandat 287.237 kb on + strandat 287.263 kb on + strandat 287.264 kb on - strandat 287.264 kb on - strandat 287.264 kb on - strandat 287.269 kb on - strandat 287.277 kb on + strandat 287.277 kb on + strandat 287.284 kb on + strandat 287.285 kb on - strandat 287.707 kb on + strand, within ABZR87_RS17500at 287.707 kb on + strand, within ABZR87_RS17500at 287.708 kb on - strand, within ABZR87_RS17500at 287.708 kb on - strand, within ABZR87_RS17500at 287.708 kb on - strand, within ABZR87_RS17500at 287.708 kb on - strand, within ABZR87_RS17500at 287.851 kb on + strand, within ABZR87_RS17500at 287.851 kb on + strand, within ABZR87_RS17500at 287.852 kb on - strand, within ABZR87_RS17500at 287.852 kb on - strand, within ABZR87_RS17500at 287.852 kb on - strand, within ABZR87_RS17500at 287.881 kb on + strand, within ABZR87_RS17500at 287.882 kb on - strand, within ABZR87_RS17500

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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284,708 + ABZR87_RS17490 0.52 -0.9
284,708 + ABZR87_RS17490 0.52 -0.3
284,708 + ABZR87_RS17490 0.52 -0.4
284,708 + ABZR87_RS17490 0.52 +0.2
284,709 - ABZR87_RS17490 0.52 -1.1
284,709 - ABZR87_RS17490 0.52 +0.1
284,759 + ABZR87_RS17490 0.55 +0.1
284,759 + ABZR87_RS17490 0.55 -1.3
284,759 + ABZR87_RS17490 0.55 -0.6
284,760 - ABZR87_RS17490 0.55 +1.2
284,760 - ABZR87_RS17490 0.55 +1.1
284,893 + ABZR87_RS17490 0.62 +0.2
284,986 - ABZR87_RS17490 0.68 +0.6
285,335 + ABZR87_RS17490 0.87 -1.0
285,336 - ABZR87_RS17490 0.88 +1.5
285,336 - ABZR87_RS17490 0.88 +0.7
285,360 - ABZR87_RS17490 0.89 +0.6
285,476 + -2.0
285,585 + +0.2
285,585 + +0.0
285,586 - +1.7
285,586 - +0.8
285,588 - -0.1
285,793 - ABZR87_RS17495 0.14 -1.2
285,793 - ABZR87_RS17495 0.14 -1.9
285,873 + ABZR87_RS17495 0.19 -3.5
285,924 + ABZR87_RS17495 0.23 -1.4
285,924 + ABZR87_RS17495 0.23 -5.1
285,924 + ABZR87_RS17495 0.23 -0.8
285,925 - ABZR87_RS17495 0.23 -0.7
285,925 - ABZR87_RS17495 0.23 -1.4
285,925 - ABZR87_RS17495 0.23 -3.1
285,925 - ABZR87_RS17495 0.23 -1.6
285,925 - ABZR87_RS17495 0.23 -2.8
285,925 - ABZR87_RS17495 0.23 -1.3
286,050 + ABZR87_RS17495 0.31 -3.1
286,050 + ABZR87_RS17495 0.31 -4.2
286,050 + ABZR87_RS17495 0.31 -1.7
286,050 + ABZR87_RS17495 0.31 -1.7
286,050 + ABZR87_RS17495 0.31 -1.1
286,051 - ABZR87_RS17495 0.31 -0.7
286,051 - ABZR87_RS17495 0.31 -2.2
286,051 - ABZR87_RS17495 0.31 -0.3
286,203 + ABZR87_RS17495 0.41 -3.6
286,203 + ABZR87_RS17495 0.41 -1.7
286,203 + ABZR87_RS17495 0.41 -1.5
286,203 + ABZR87_RS17495 0.41 -0.6
286,204 - ABZR87_RS17495 0.41 -0.3
286,212 + ABZR87_RS17495 0.42 -1.3
286,213 - ABZR87_RS17495 0.42 -1.5
286,213 - ABZR87_RS17495 0.42 -0.4
286,213 - ABZR87_RS17495 0.42 -1.4
286,213 - ABZR87_RS17495 0.42 -0.9
286,308 + ABZR87_RS17495 0.48 -1.4
286,309 - ABZR87_RS17495 0.49 -2.6
286,350 + ABZR87_RS17495 0.51 -0.5
286,350 + ABZR87_RS17495 0.51 -3.2
286,350 + ABZR87_RS17495 0.51 -1.3
286,350 + ABZR87_RS17495 0.51 -1.5
286,350 + ABZR87_RS17495 0.51 -1.1
286,350 + ABZR87_RS17495 0.51 +0.0
286,350 + ABZR87_RS17495 0.51 -1.5
286,351 - ABZR87_RS17495 0.51 +0.3
286,351 - ABZR87_RS17495 0.51 -1.4
286,351 - ABZR87_RS17495 0.51 -2.1
286,351 - ABZR87_RS17495 0.51 -1.7
286,351 - ABZR87_RS17495 0.51 -2.0
286,351 - ABZR87_RS17495 0.51 +0.1
286,368 + ABZR87_RS17495 0.52 -0.6
286,375 + ABZR87_RS17495 0.53 -0.8
286,495 - ABZR87_RS17495 0.61 -1.3
286,646 - ABZR87_RS17495 0.71 -3.6
286,647 + ABZR87_RS17495 0.71 -1.5
286,648 - ABZR87_RS17495 0.71 +0.9
286,648 - ABZR87_RS17495 0.71 -0.3
286,686 + ABZR87_RS17495 0.74 -1.9
286,687 - ABZR87_RS17495 0.74 -2.1
286,716 + ABZR87_RS17495 0.76 +0.1
286,820 + ABZR87_RS17495 0.83 -2.3
286,820 + ABZR87_RS17495 0.83 -1.1
286,893 + ABZR87_RS17495 0.88 -1.6
286,894 - ABZR87_RS17495 0.88 -1.2
286,894 - ABZR87_RS17495 0.88 -0.7
286,933 - -0.5
286,933 - -1.9
287,237 + +0.5
287,237 + +0.1
287,263 + -0.6
287,264 - +1.8
287,264 - -1.3
287,264 - +1.0
287,269 - -0.5
287,277 + -0.6
287,277 + -0.8
287,284 + +0.5
287,285 - -0.9
287,707 + ABZR87_RS17500 0.10 -0.5
287,707 + ABZR87_RS17500 0.10 +1.2
287,708 - ABZR87_RS17500 0.11 -2.4
287,708 - ABZR87_RS17500 0.11 -0.6
287,708 - ABZR87_RS17500 0.11 +0.8
287,708 - ABZR87_RS17500 0.11 +0.2
287,851 + ABZR87_RS17500 0.16 +0.3
287,851 + ABZR87_RS17500 0.16 +0.4
287,852 - ABZR87_RS17500 0.16 -0.3
287,852 - ABZR87_RS17500 0.16 -1.6
287,852 - ABZR87_RS17500 0.16 -0.4
287,881 + ABZR87_RS17500 0.17 +0.8
287,882 - ABZR87_RS17500 0.17 +1.2

Or see this region's nucleotide sequence