Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14665

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14655 and ABZR87_RS14660 are separated by 42 nucleotidesABZR87_RS14660 and ABZR87_RS14665 are separated by 12 nucleotidesABZR87_RS14665 and ABZR87_RS14670 are separated by 38 nucleotides ABZR87_RS14655: ABZR87_RS14655 - 3-hydroxyacyl-CoA dehydrogenase, at 3,095,664 to 3,097,235 _RS14655 ABZR87_RS14660: ABZR87_RS14660 - oxepin-CoA hydrolase, alternative type, at 3,097,278 to 3,098,057 _RS14660 ABZR87_RS14665: ABZR87_RS14665 - histidine phosphatase family protein, at 3,098,070 to 3,098,804 _RS14665 ABZR87_RS14670: ABZR87_RS14670 - phosphotransferase, at 3,098,843 to 3,099,931 _RS14670 Position (kb) 3098 3099Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3097.072 kb on - strand, within ABZR87_RS14655at 3097.100 kb on + strandat 3097.143 kb on + strandat 3097.143 kb on + strandat 3097.143 kb on + strandat 3097.144 kb on - strandat 3097.144 kb on - strandat 3097.144 kb on - strandat 3097.152 kb on + strandat 3097.153 kb on - strandat 3097.260 kb on + strandat 3097.261 kb on - strandat 3097.371 kb on + strand, within ABZR87_RS14660at 3097.372 kb on - strand, within ABZR87_RS14660at 3097.372 kb on - strand, within ABZR87_RS14660at 3097.372 kb on - strand, within ABZR87_RS14660at 3097.372 kb on - strand, within ABZR87_RS14660at 3097.372 kb on - strand, within ABZR87_RS14660at 3097.487 kb on - strand, within ABZR87_RS14660at 3097.680 kb on + strand, within ABZR87_RS14660at 3097.680 kb on + strand, within ABZR87_RS14660at 3097.680 kb on + strand, within ABZR87_RS14660at 3097.680 kb on + strand, within ABZR87_RS14660at 3097.681 kb on - strand, within ABZR87_RS14660at 3097.681 kb on - strand, within ABZR87_RS14660at 3097.681 kb on - strand, within ABZR87_RS14660at 3098.049 kb on + strandat 3098.049 kb on + strandat 3098.050 kb on - strandat 3098.133 kb on + strandat 3098.134 kb on - strandat 3098.134 kb on - strandat 3098.285 kb on - strand, within ABZR87_RS14665at 3098.764 kb on + strandat 3098.764 kb on + strandat 3098.778 kb on + strandat 3098.779 kb on - strandat 3098.816 kb on + strandat 3099.041 kb on + strand, within ABZR87_RS14670at 3099.041 kb on + strand, within ABZR87_RS14670at 3099.041 kb on + strand, within ABZR87_RS14670at 3099.041 kb on + strand, within ABZR87_RS14670at 3099.041 kb on + strand, within ABZR87_RS14670at 3099.042 kb on - strand, within ABZR87_RS14670at 3099.042 kb on - strand, within ABZR87_RS14670at 3099.161 kb on + strand, within ABZR87_RS14670at 3099.161 kb on + strand, within ABZR87_RS14670at 3099.161 kb on + strand, within ABZR87_RS14670at 3099.161 kb on + strand, within ABZR87_RS14670at 3099.161 kb on + strand, within ABZR87_RS14670at 3099.161 kb on + strand, within ABZR87_RS14670at 3099.162 kb on - strand, within ABZR87_RS14670at 3099.162 kb on - strand, within ABZR87_RS14670at 3099.190 kb on - strand, within ABZR87_RS14670at 3099.203 kb on + strand, within ABZR87_RS14670at 3099.203 kb on + strand, within ABZR87_RS14670at 3099.203 kb on + strand, within ABZR87_RS14670at 3099.203 kb on + strand, within ABZR87_RS14670at 3099.203 kb on + strand, within ABZR87_RS14670at 3099.204 kb on - strand, within ABZR87_RS14670at 3099.204 kb on - strand, within ABZR87_RS14670at 3099.204 kb on - strand, within ABZR87_RS14670at 3099.204 kb on - strand, within ABZR87_RS14670at 3099.204 kb on - strand, within ABZR87_RS14670at 3099.204 kb on - strand, within ABZR87_RS14670at 3099.220 kb on - strand, within ABZR87_RS14670at 3099.220 kb on - strand, within ABZR87_RS14670at 3099.284 kb on + strand, within ABZR87_RS14670at 3099.285 kb on - strand, within ABZR87_RS14670at 3099.285 kb on - strand, within ABZR87_RS14670at 3099.285 kb on - strand, within ABZR87_RS14670at 3099.285 kb on - strand, within ABZR87_RS14670at 3099.329 kb on + strand, within ABZR87_RS14670at 3099.354 kb on - strand, within ABZR87_RS14670at 3099.371 kb on + strand, within ABZR87_RS14670at 3099.372 kb on - strand, within ABZR87_RS14670at 3099.372 kb on - strand, within ABZR87_RS14670at 3099.372 kb on - strand, within ABZR87_RS14670at 3099.408 kb on - strand, within ABZR87_RS14670at 3099.408 kb on - strand, within ABZR87_RS14670at 3099.408 kb on - strand, within ABZR87_RS14670at 3099.408 kb on - strand, within ABZR87_RS14670at 3099.621 kb on - strand, within ABZR87_RS14670at 3099.713 kb on + strand, within ABZR87_RS14670at 3099.713 kb on + strand, within ABZR87_RS14670at 3099.714 kb on - strand, within ABZR87_RS14670at 3099.714 kb on - strand, within ABZR87_RS14670at 3099.770 kb on + strand, within ABZR87_RS14670at 3099.771 kb on - strand, within ABZR87_RS14670at 3099.771 kb on - strand, within ABZR87_RS14670at 3099.779 kb on + strand, within ABZR87_RS14670at 3099.780 kb on - strand, within ABZR87_RS14670at 3099.780 kb on - strand, within ABZR87_RS14670

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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3,097,072 - ABZR87_RS14655 0.90 -2.9
3,097,100 + -2.3
3,097,143 + -0.5
3,097,143 + -3.1
3,097,143 + -1.2
3,097,144 - -1.0
3,097,144 - -0.2
3,097,144 - -1.1
3,097,152 + -4.1
3,097,153 - -1.3
3,097,260 + -0.0
3,097,261 - -0.6
3,097,371 + ABZR87_RS14660 0.12 -0.7
3,097,372 - ABZR87_RS14660 0.12 +1.1
3,097,372 - ABZR87_RS14660 0.12 -0.1
3,097,372 - ABZR87_RS14660 0.12 -1.8
3,097,372 - ABZR87_RS14660 0.12 +0.4
3,097,372 - ABZR87_RS14660 0.12 -0.6
3,097,487 - ABZR87_RS14660 0.27 +0.6
3,097,680 + ABZR87_RS14660 0.52 +0.2
3,097,680 + ABZR87_RS14660 0.52 +0.4
3,097,680 + ABZR87_RS14660 0.52 -1.2
3,097,680 + ABZR87_RS14660 0.52 +0.9
3,097,681 - ABZR87_RS14660 0.52 -0.8
3,097,681 - ABZR87_RS14660 0.52 +0.0
3,097,681 - ABZR87_RS14660 0.52 -0.3
3,098,049 + -0.8
3,098,049 + +0.1
3,098,050 - -1.4
3,098,133 + -1.5
3,098,134 - -1.4
3,098,134 - +0.1
3,098,285 - ABZR87_RS14665 0.29 -0.6
3,098,764 + -0.2
3,098,764 + -0.2
3,098,778 + +1.3
3,098,779 - +0.1
3,098,816 + +0.0
3,099,041 + ABZR87_RS14670 0.18 -0.4
3,099,041 + ABZR87_RS14670 0.18 -0.4
3,099,041 + ABZR87_RS14670 0.18 -0.9
3,099,041 + ABZR87_RS14670 0.18 +0.5
3,099,041 + ABZR87_RS14670 0.18 -0.4
3,099,042 - ABZR87_RS14670 0.18 +0.9
3,099,042 - ABZR87_RS14670 0.18 -0.5
3,099,161 + ABZR87_RS14670 0.29 +0.0
3,099,161 + ABZR87_RS14670 0.29 -0.3
3,099,161 + ABZR87_RS14670 0.29 -0.8
3,099,161 + ABZR87_RS14670 0.29 +0.5
3,099,161 + ABZR87_RS14670 0.29 -0.9
3,099,161 + ABZR87_RS14670 0.29 -2.4
3,099,162 - ABZR87_RS14670 0.29 +0.2
3,099,162 - ABZR87_RS14670 0.29 +0.6
3,099,190 - ABZR87_RS14670 0.32 +1.3
3,099,203 + ABZR87_RS14670 0.33 +0.4
3,099,203 + ABZR87_RS14670 0.33 +0.7
3,099,203 + ABZR87_RS14670 0.33 -0.2
3,099,203 + ABZR87_RS14670 0.33 +1.5
3,099,203 + ABZR87_RS14670 0.33 +0.8
3,099,204 - ABZR87_RS14670 0.33 +1.2
3,099,204 - ABZR87_RS14670 0.33 +0.6
3,099,204 - ABZR87_RS14670 0.33 +0.4
3,099,204 - ABZR87_RS14670 0.33 -1.9
3,099,204 - ABZR87_RS14670 0.33 -0.4
3,099,204 - ABZR87_RS14670 0.33 +1.1
3,099,220 - ABZR87_RS14670 0.35 -0.0
3,099,220 - ABZR87_RS14670 0.35 +0.8
3,099,284 + ABZR87_RS14670 0.40 +0.2
3,099,285 - ABZR87_RS14670 0.41 -2.1
3,099,285 - ABZR87_RS14670 0.41 -0.3
3,099,285 - ABZR87_RS14670 0.41 -0.4
3,099,285 - ABZR87_RS14670 0.41 -0.2
3,099,329 + ABZR87_RS14670 0.45 +0.3
3,099,354 - ABZR87_RS14670 0.47 +2.3
3,099,371 + ABZR87_RS14670 0.48 -0.2
3,099,372 - ABZR87_RS14670 0.49 +0.8
3,099,372 - ABZR87_RS14670 0.49 -0.2
3,099,372 - ABZR87_RS14670 0.49 -1.1
3,099,408 - ABZR87_RS14670 0.52 -0.2
3,099,408 - ABZR87_RS14670 0.52 +0.9
3,099,408 - ABZR87_RS14670 0.52 -0.7
3,099,408 - ABZR87_RS14670 0.52 -0.0
3,099,621 - ABZR87_RS14670 0.71 +0.1
3,099,713 + ABZR87_RS14670 0.80 +0.8
3,099,713 + ABZR87_RS14670 0.80 +0.7
3,099,714 - ABZR87_RS14670 0.80 -1.2
3,099,714 - ABZR87_RS14670 0.80 +0.1
3,099,770 + ABZR87_RS14670 0.85 -1.8
3,099,771 - ABZR87_RS14670 0.85 -0.3
3,099,771 - ABZR87_RS14670 0.85 +0.0
3,099,779 + ABZR87_RS14670 0.86 -1.6
3,099,780 - ABZR87_RS14670 0.86 -0.4
3,099,780 - ABZR87_RS14670 0.86 -0.9

Or see this region's nucleotide sequence