Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14540 and ABZR87_RS14545 are separated by 227 nucleotides ABZR87_RS14545 and ABZR87_RS14550 are separated by 122 nucleotides ABZR87_RS14550 and ABZR87_RS14555 are separated by 71 nucleotides
ABZR87_RS14540: ABZR87_RS14540 - 3-isopropylmalate dehydratase large subunit, at 3,071,495 to 3,072,904
_RS14540
ABZR87_RS14545: ABZR87_RS14545 - citrate synthase, at 3,073,132 to 3,074,433
_RS14545
ABZR87_RS14550: ABZR87_RS14550 - succinate dehydrogenase assembly factor 2, at 3,074,556 to 3,074,843
_RS14550
ABZR87_RS14555: ABZR87_RS14555 - succinate dehydrogenase iron-sulfur subunit, at 3,074,915 to 3,075,616
_RS14555
Position (kb)
3073
3074
3075 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3072.180 kb on + strand, within ABZR87_RS14540 at 3072.181 kb on - strand, within ABZR87_RS14540 at 3072.449 kb on + strand, within ABZR87_RS14540 at 3072.449 kb on + strand, within ABZR87_RS14540 at 3072.450 kb on - strand, within ABZR87_RS14540 at 3072.628 kb on - strand, within ABZR87_RS14540 at 3072.628 kb on - strand, within ABZR87_RS14540 at 3072.828 kb on + strand at 3072.828 kb on + strand at 3072.828 kb on + strand at 3072.828 kb on + strand at 3072.829 kb on - strand at 3072.829 kb on - strand at 3072.829 kb on - strand at 3072.856 kb on + strand at 3072.916 kb on + strand at 3072.982 kb on + strand at 3072.982 kb on + strand at 3073.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 3,072,180 + ABZR87_RS14540 0.49 -5.3 3,072,181 - ABZR87_RS14540 0.49 -3.6 3,072,449 + ABZR87_RS14540 0.68 -1.6 3,072,449 + ABZR87_RS14540 0.68 -2.8 3,072,450 - ABZR87_RS14540 0.68 -5.0 3,072,628 - ABZR87_RS14540 0.80 -5.0 3,072,628 - ABZR87_RS14540 0.80 -1.3 3,072,828 + -2.8 3,072,828 + +1.7 3,072,828 + -4.6 3,072,828 + -3.0 3,072,829 - -2.4 3,072,829 - -1.8 3,072,829 - -3.2 3,072,856 + -2.4 3,072,916 + -2.7 3,072,982 + -4.2 3,072,982 + -4.5 3,073,133 + -0.1
Or see this region's nucleotide sequence