Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10930

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10920 and ABZR87_RS10925 are separated by 65 nucleotidesABZR87_RS10925 and ABZR87_RS10930 are separated by 48 nucleotidesABZR87_RS10930 and ABZR87_RS10935 are separated by 195 nucleotides ABZR87_RS10920: ABZR87_RS10920 - histidine--tRNA ligase, at 2,312,529 to 2,313,851 _RS10920 ABZR87_RS10925: ABZR87_RS10925 - tetratricopeptide repeat protein, at 2,313,917 to 2,314,552 _RS10925 ABZR87_RS10930: ABZR87_RS10930 - outer membrane protein assembly factor BamB, at 2,314,601 to 2,315,779 _RS10930 ABZR87_RS10935: ABZR87_RS10935 - ribosome biogenesis GTPase Der, at 2,315,975 to 2,317,318 _RS10935 Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2313.923 kb on + strandat 2313.924 kb on - strandat 2313.948 kb on + strandat 2313.948 kb on + strandat 2313.948 kb on + strandat 2313.949 kb on - strandat 2314.085 kb on + strand, within ABZR87_RS10925at 2314.095 kb on + strand, within ABZR87_RS10925at 2314.095 kb on + strand, within ABZR87_RS10925at 2314.178 kb on + strand, within ABZR87_RS10925at 2314.217 kb on + strand, within ABZR87_RS10925at 2314.289 kb on + strand, within ABZR87_RS10925at 2314.289 kb on + strand, within ABZR87_RS10925at 2314.289 kb on + strand, within ABZR87_RS10925at 2314.344 kb on - strand, within ABZR87_RS10925at 2314.362 kb on + strand, within ABZR87_RS10925at 2314.400 kb on + strand, within ABZR87_RS10925at 2314.463 kb on + strand, within ABZR87_RS10925at 2314.580 kb on + strandat 2314.847 kb on + strand, within ABZR87_RS10930at 2314.847 kb on + strand, within ABZR87_RS10930at 2315.150 kb on + strand, within ABZR87_RS10930at 2315.521 kb on + strand, within ABZR87_RS10930at 2315.521 kb on + strand, within ABZR87_RS10930at 2315.521 kb on + strand, within ABZR87_RS10930at 2315.759 kb on + strandat 2315.777 kb on + strandat 2315.777 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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2,313,923 + -3.1
2,313,924 - -1.9
2,313,948 + +0.3
2,313,948 + +0.3
2,313,948 + -2.0
2,313,949 - -0.9
2,314,085 + ABZR87_RS10925 0.26 +0.8
2,314,095 + ABZR87_RS10925 0.28 +0.3
2,314,095 + ABZR87_RS10925 0.28 +0.8
2,314,178 + ABZR87_RS10925 0.41 -0.0
2,314,217 + ABZR87_RS10925 0.47 +0.7
2,314,289 + ABZR87_RS10925 0.58 -0.1
2,314,289 + ABZR87_RS10925 0.58 -2.4
2,314,289 + ABZR87_RS10925 0.58 +0.8
2,314,344 - ABZR87_RS10925 0.67 +1.4
2,314,362 + ABZR87_RS10925 0.70 -0.3
2,314,400 + ABZR87_RS10925 0.76 -0.5
2,314,463 + ABZR87_RS10925 0.86 +2.6
2,314,580 + +0.5
2,314,847 + ABZR87_RS10930 0.21 -2.3
2,314,847 + ABZR87_RS10930 0.21 -2.9
2,315,150 + ABZR87_RS10930 0.47 -0.6
2,315,521 + ABZR87_RS10930 0.78 +0.3
2,315,521 + ABZR87_RS10930 0.78 -0.4
2,315,521 + ABZR87_RS10930 0.78 -0.3
2,315,759 + +0.3
2,315,777 + -0.9
2,315,777 + -2.6

Or see this region's nucleotide sequence