Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01800 and ABZR87_RS01805 are separated by 5 nucleotides ABZR87_RS01805 and ABZR87_RS01810 are separated by 95 nucleotides ABZR87_RS01810 and ABZR87_RS01815 are separated by 33 nucleotides
ABZR87_RS01800: ABZR87_RS01800 - RNA pyrophosphohydrolase, at 383,502 to 384,209
_RS01800
ABZR87_RS01805: ABZR87_RS01805 - CNP1-like family protein, at 384,215 to 384,847
_RS01805
ABZR87_RS01810: ABZR87_RS01810 - glutamate 5-kinase, at 384,943 to 386,067
_RS01810
ABZR87_RS01815: ABZR87_RS01815 - GTPase ObgE, at 386,101 to 387,195
_RS01815
Position (kb) 384
385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.998 kb on - strand, within ABZR87_RS01800 at 384.047 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.087 kb on + strand, within ABZR87_RS01800 at 384.088 kb on - strand, within ABZR87_RS01800 at 384.088 kb on - strand, within ABZR87_RS01800 at 384.295 kb on + strand, within ABZR87_RS01805 at 384.497 kb on + strand, within ABZR87_RS01805 at 384.497 kb on + strand, within ABZR87_RS01805 at 384.498 kb on - strand, within ABZR87_RS01805 at 384.498 kb on - strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.542 kb on + strand, within ABZR87_RS01805 at 384.543 kb on - strand, within ABZR87_RS01805 at 384.543 kb on - strand, within ABZR87_RS01805 at 384.581 kb on + strand, within ABZR87_RS01805 at 384.581 kb on + strand, within ABZR87_RS01805 at 384.581 kb on + strand, within ABZR87_RS01805 at 384.582 kb on - strand, within ABZR87_RS01805 at 384.582 kb on - strand, within ABZR87_RS01805 at 384.677 kb on + strand, within ABZR87_RS01805 at 384.677 kb on + strand, within ABZR87_RS01805 at 384.678 kb on - strand, within ABZR87_RS01805 at 384.678 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.729 kb on - strand, within ABZR87_RS01805 at 384.753 kb on - strand, within ABZR87_RS01805 at 384.796 kb on + strand at 384.796 kb on + strand at 384.797 kb on - strand at 384.797 kb on - strand at 384.797 kb on - strand at 384.836 kb on + strand at 384.836 kb on + strand at 384.846 kb on - strand at 384.869 kb on + strand at 384.869 kb on + strand at 384.869 kb on + strand at 384.869 kb on + strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.870 kb on - strand at 384.992 kb on + strand at 385.058 kb on + strand, within ABZR87_RS01810 at 385.058 kb on + strand, within ABZR87_RS01810 at 385.058 kb on + strand, within ABZR87_RS01810 at 385.059 kb on - strand, within ABZR87_RS01810 at 385.059 kb on - strand, within ABZR87_RS01810 at 385.059 kb on - strand, within ABZR87_RS01810 at 386.103 kb on - strand at 386.103 kb on - strand at 386.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 383,998 - ABZR87_RS01800 0.70 -0.5 384,047 + ABZR87_RS01800 0.77 -0.3 384,087 + ABZR87_RS01800 0.83 -1.1 384,087 + ABZR87_RS01800 0.83 -0.7 384,087 + ABZR87_RS01800 0.83 +0.1 384,087 + ABZR87_RS01800 0.83 +0.5 384,088 - ABZR87_RS01800 0.83 +1.2 384,088 - ABZR87_RS01800 0.83 +0.4 384,295 + ABZR87_RS01805 0.13 -0.0 384,497 + ABZR87_RS01805 0.45 +0.8 384,497 + ABZR87_RS01805 0.45 -1.3 384,498 - ABZR87_RS01805 0.45 +1.0 384,498 - ABZR87_RS01805 0.45 -0.9 384,542 + ABZR87_RS01805 0.52 -0.0 384,542 + ABZR87_RS01805 0.52 +0.2 384,542 + ABZR87_RS01805 0.52 +0.3 384,542 + ABZR87_RS01805 0.52 -0.6 384,542 + ABZR87_RS01805 0.52 -0.5 384,542 + ABZR87_RS01805 0.52 +0.5 384,543 - ABZR87_RS01805 0.52 -1.0 384,543 - ABZR87_RS01805 0.52 -0.2 384,581 + ABZR87_RS01805 0.58 +1.3 384,581 + ABZR87_RS01805 0.58 +0.1 384,581 + ABZR87_RS01805 0.58 +0.2 384,582 - ABZR87_RS01805 0.58 +0.4 384,582 - ABZR87_RS01805 0.58 -1.3 384,677 + ABZR87_RS01805 0.73 -1.7 384,677 + ABZR87_RS01805 0.73 +0.4 384,678 - ABZR87_RS01805 0.73 -0.4 384,678 - ABZR87_RS01805 0.73 -0.2 384,729 - ABZR87_RS01805 0.81 +0.2 384,729 - ABZR87_RS01805 0.81 +0.7 384,729 - ABZR87_RS01805 0.81 +0.6 384,729 - ABZR87_RS01805 0.81 -0.2 384,729 - ABZR87_RS01805 0.81 -0.1 384,729 - ABZR87_RS01805 0.81 +0.7 384,729 - ABZR87_RS01805 0.81 +0.3 384,753 - ABZR87_RS01805 0.85 -1.5 384,796 + -0.3 384,796 + -0.4 384,797 - -0.6 384,797 - -0.8 384,797 - -0.7 384,836 + -0.1 384,836 + -1.4 384,846 - +2.0 384,869 + +0.7 384,869 + -0.4 384,869 + -0.5 384,869 + +0.3 384,870 - +0.3 384,870 - +0.3 384,870 - +0.2 384,870 - +0.2 384,870 - +0.9 384,870 - +1.0 384,992 + -1.8 385,058 + ABZR87_RS01810 0.10 -3.4 385,058 + ABZR87_RS01810 0.10 -1.1 385,058 + ABZR87_RS01810 0.10 -3.4 385,059 - ABZR87_RS01810 0.10 -3.0 385,059 - ABZR87_RS01810 0.10 -2.9 385,059 - ABZR87_RS01810 0.10 -2.8 386,103 - -0.4 386,103 - +0.2 386,103 - +0.5
Or see this region's nucleotide sequence