Strain Fitness in Sinorhizobium meliloti 1021 around SMc03819

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03818 and SMc03819 are separated by 13 nucleotidesSMc03819 and SMc03820 are separated by 32 nucleotidesSMc03820 and SMc03821 are separated by 246 nucleotides SMc03818: SMc03818 - exodeoxyribonuclease III protein, at 3,485,446 to 3,486,252 SMc03818 SMc03819: SMc03819 - hypothetical protein, at 3,486,266 to 3,486,721 SMc03819 SMc03820: SMc03820 - transcriptional regulator, at 3,486,754 to 3,487,437 SMc03820 SMc03821: SMc03821 - hypothetical protein, at 3,487,684 to 3,488,232 SMc03821 Position (kb) 3486 3487Strain fitness (log2 ratio) -1 0 1at 3485.611 kb on + strand, within SMc03818at 3485.611 kb on + strand, within SMc03818at 3485.612 kb on - strand, within SMc03818at 3485.613 kb on + strand, within SMc03818at 3485.639 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3486.071 kb on - strand, within SMc03818at 3486.071 kb on - strand, within SMc03818at 3486.086 kb on - strand, within SMc03818at 3486.743 kb on + strandat 3487.531 kb on - strandat 3487.539 kb on + strandat 3487.623 kb on + strandat 3487.624 kb on - strandat 3487.624 kb on - strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.626 kb on - strandat 3487.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,485,611 + SMc03818 0.20 -0.2
3,485,611 + SMc03818 0.20 +1.0
3,485,612 - SMc03818 0.21 -0.2
3,485,613 + SMc03818 0.21 +1.2
3,485,639 - SMc03818 0.24 +0.1
3,485,770 - SMc03818 0.40 +1.2
3,485,770 - SMc03818 0.40 -0.5
3,485,770 - SMc03818 0.40 -0.9
3,486,071 - SMc03818 0.77 -0.4
3,486,071 - SMc03818 0.77 -0.1
3,486,086 - SMc03818 0.79 +0.1
3,486,743 + -0.4
3,487,531 - -1.3
3,487,539 + -1.2
3,487,623 + +0.1
3,487,624 - -0.3
3,487,624 - -0.2
3,487,625 + -0.6
3,487,625 + -0.7
3,487,625 + -1.1
3,487,625 + -0.2
3,487,625 + -1.0
3,487,625 + -0.1
3,487,626 - -0.4
3,487,640 - -0.9

Or see this region's nucleotide sequence