Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01638 and SMc01639 are separated by 251 nucleotides SMc01639 and SMc01640 are separated by 194 nucleotides
SMc01638: SMc01638 - bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase, at 2,430,531 to 2,432,021
SMc01638
SMc01639: SMc01639 - acyl-CoA dehydrogenase, at 2,432,273 to 2,433,433
SMc01639
SMc01640: SMc01640 - acyl-COA synthetase, at 2,433,628 to 2,435,691
SMc01640
Position (kb)
2432
2433
2434 Strain fitness (log2 ratio)
-2
-1
0
1 at 2431.606 kb on - strand, within SMc01638 at 2431.716 kb on + strand, within SMc01638 at 2431.716 kb on + strand, within SMc01638 at 2431.716 kb on + strand, within SMc01638 at 2431.716 kb on + strand, within SMc01638 at 2431.719 kb on + strand, within SMc01638 at 2431.719 kb on + strand, within SMc01638 at 2431.720 kb on - strand, within SMc01638 at 2431.777 kb on - strand, within SMc01638 at 2431.778 kb on + strand, within SMc01638 at 2431.779 kb on - strand, within SMc01638 at 2431.779 kb on - strand, within SMc01638 at 2431.779 kb on - strand, within SMc01638 at 2432.006 kb on - strand at 2432.006 kb on - strand at 2432.097 kb on - strand at 2432.122 kb on + strand at 2432.123 kb on - strand at 2432.123 kb on - strand at 2432.136 kb on + strand at 2432.166 kb on - strand at 2432.346 kb on - strand at 2432.346 kb on - strand at 2432.752 kb on + strand, within SMc01639 at 2432.753 kb on - strand, within SMc01639 at 2432.876 kb on + strand, within SMc01639 at 2432.900 kb on + strand, within SMc01639 at 2432.968 kb on + strand, within SMc01639 at 2432.968 kb on + strand, within SMc01639 at 2432.969 kb on - strand, within SMc01639 at 2432.999 kb on + strand, within SMc01639 at 2432.999 kb on + strand, within SMc01639 at 2433.000 kb on - strand, within SMc01639 at 2433.060 kb on - strand, within SMc01639 at 2433.293 kb on + strand, within SMc01639 at 2433.294 kb on - strand, within SMc01639 at 2433.451 kb on + strand at 2433.917 kb on - strand, within SMc01640 at 2434.125 kb on + strand, within SMc01640 at 2434.137 kb on + strand, within SMc01640 at 2434.137 kb on + strand, within SMc01640 at 2434.137 kb on + strand, within SMc01640 at 2434.138 kb on - strand, within SMc01640 at 2434.171 kb on + strand, within SMc01640 at 2434.171 kb on + strand, within SMc01640 at 2434.171 kb on + strand, within SMc01640 at 2434.172 kb on - strand, within SMc01640 at 2434.172 kb on - strand, within SMc01640 at 2434.172 kb on - strand, within SMc01640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,431,606 - SMc01638 0.72 -1.8 2,431,716 + SMc01638 0.79 +1.4 2,431,716 + SMc01638 0.79 -0.2 2,431,716 + SMc01638 0.79 +0.7 2,431,716 + SMc01638 0.79 +0.1 2,431,719 + SMc01638 0.80 -0.3 2,431,719 + SMc01638 0.80 -0.5 2,431,720 - SMc01638 0.80 +0.4 2,431,777 - SMc01638 0.84 +0.9 2,431,778 + SMc01638 0.84 -1.9 2,431,779 - SMc01638 0.84 +0.3 2,431,779 - SMc01638 0.84 -0.0 2,431,779 - SMc01638 0.84 -0.2 2,432,006 - -0.3 2,432,006 - -0.2 2,432,097 - +0.4 2,432,122 + -0.8 2,432,123 - -1.1 2,432,123 - +0.4 2,432,136 + -0.4 2,432,166 - -0.1 2,432,346 - +0.6 2,432,346 - +0.1 2,432,752 + SMc01639 0.41 +0.4 2,432,753 - SMc01639 0.41 -0.0 2,432,876 + SMc01639 0.52 -0.2 2,432,900 + SMc01639 0.54 -0.1 2,432,968 + SMc01639 0.60 -0.3 2,432,968 + SMc01639 0.60 -1.0 2,432,969 - SMc01639 0.60 -0.7 2,432,999 + SMc01639 0.63 -1.0 2,432,999 + SMc01639 0.63 +0.2 2,433,000 - SMc01639 0.63 -0.3 2,433,060 - SMc01639 0.68 -1.3 2,433,293 + SMc01639 0.88 -0.8 2,433,294 - SMc01639 0.88 -2.2 2,433,451 + -0.1 2,433,917 - SMc01640 0.14 -0.7 2,434,125 + SMc01640 0.24 -0.9 2,434,137 + SMc01640 0.25 -0.0 2,434,137 + SMc01640 0.25 +0.2 2,434,137 + SMc01640 0.25 -0.8 2,434,138 - SMc01640 0.25 +0.5 2,434,171 + SMc01640 0.26 +0.2 2,434,171 + SMc01640 0.26 -1.2 2,434,171 + SMc01640 0.26 -2.2 2,434,172 - SMc01640 0.26 -0.3 2,434,172 - SMc01640 0.26 +0.2 2,434,172 - SMc01640 0.26 -0.2
Or see this region's nucleotide sequence