Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01092 and SMc01091 are separated by 10 nucleotides SMc01091 and SMc01090 are separated by 78 nucleotides SMc01090 and SMc01089 are separated by 152 nucleotides SMc01089 and SMc01732 are separated by 2 nucleotides
SMc01092: SMc01092 - transcriptional regulator, at 466,650 to 467,540
SMc01092
SMc01091: SMc01091 - hypothetical protein, at 467,551 to 467,694
SMc01091
SMc01090: SMc01090 - ATP-dependent RNA helicase, at 467,773 to 469,665
SMc01090
SMc01089: SMc01089 - hypothetical protein, at 469,818 to 470,204
SMc01089
SMc01732: SMc01732 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 470,207 to 471,097
SMc01732
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 466.948 kb on + strand, within SMc01092 at 466.984 kb on - strand, within SMc01092 at 467.196 kb on + strand, within SMc01092 at 467.196 kb on + strand, within SMc01092 at 467.208 kb on + strand, within SMc01092 at 467.209 kb on - strand, within SMc01092 at 467.286 kb on + strand, within SMc01092 at 467.288 kb on + strand, within SMc01092 at 467.288 kb on + strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.316 kb on + strand, within SMc01092 at 467.316 kb on + strand, within SMc01092 at 467.316 kb on + strand, within SMc01092 at 467.317 kb on - strand, within SMc01092 at 467.317 kb on - strand, within SMc01092 at 467.442 kb on + strand, within SMc01092 at 467.442 kb on + strand, within SMc01092 at 467.442 kb on + strand, within SMc01092 at 467.574 kb on - strand, within SMc01091 at 467.574 kb on - strand, within SMc01091 at 467.574 kb on - strand, within SMc01091 at 467.574 kb on - strand, within SMc01091 at 468.131 kb on + strand, within SMc01090 at 468.131 kb on + strand, within SMc01090 at 468.132 kb on - strand, within SMc01090 at 468.942 kb on - strand, within SMc01090 at 469.004 kb on + strand, within SMc01090 at 469.068 kb on - strand, within SMc01090 at 469.228 kb on + strand, within SMc01090 at 469.231 kb on - strand, within SMc01090 at 469.252 kb on - strand, within SMc01090 at 469.374 kb on - strand, within SMc01090 at 469.765 kb on + strand at 469.781 kb on + strand at 469.782 kb on - strand at 469.785 kb on + strand at 469.785 kb on + strand at 469.785 kb on + strand at 469.786 kb on - strand at 469.786 kb on - strand at 469.786 kb on - strand at 469.959 kb on - strand, within SMc01089
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 466,948 + SMc01092 0.33 -0.8 466,984 - SMc01092 0.37 -0.3 467,196 + SMc01092 0.61 -0.4 467,196 + SMc01092 0.61 +0.0 467,208 + SMc01092 0.63 +0.7 467,209 - SMc01092 0.63 +0.2 467,286 + SMc01092 0.71 -0.9 467,288 + SMc01092 0.72 +1.8 467,288 + SMc01092 0.72 -0.9 467,289 - SMc01092 0.72 +0.1 467,289 - SMc01092 0.72 +2.0 467,289 - SMc01092 0.72 -1.1 467,289 - SMc01092 0.72 +0.6 467,289 - SMc01092 0.72 +1.7 467,316 + SMc01092 0.75 +0.1 467,316 + SMc01092 0.75 -0.7 467,316 + SMc01092 0.75 +0.4 467,317 - SMc01092 0.75 -2.6 467,317 - SMc01092 0.75 -0.2 467,442 + SMc01092 0.89 -0.0 467,442 + SMc01092 0.89 -0.1 467,442 + SMc01092 0.89 -0.8 467,574 - SMc01091 0.16 -1.1 467,574 - SMc01091 0.16 +0.0 467,574 - SMc01091 0.16 +0.4 467,574 - SMc01091 0.16 -0.3 468,131 + SMc01090 0.19 +0.1 468,131 + SMc01090 0.19 +0.8 468,132 - SMc01090 0.19 +1.3 468,942 - SMc01090 0.62 +0.8 469,004 + SMc01090 0.65 +0.7 469,068 - SMc01090 0.68 -0.9 469,228 + SMc01090 0.77 +1.0 469,231 - SMc01090 0.77 -0.1 469,252 - SMc01090 0.78 +0.4 469,374 - SMc01090 0.85 -0.6 469,765 + -1.0 469,781 + +1.0 469,782 - +0.5 469,785 + -1.0 469,785 + +0.6 469,785 + -0.0 469,786 - -0.3 469,786 - -0.8 469,786 - +0.1 469,959 - SMc01089 0.36 +0.9
Or see this region's nucleotide sequence