Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1269 and SMa1272 are separated by 4 nucleotides SMa1272 and SMa1273 are separated by 59 nucleotides
SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803
SMa1269
SMa1272: SMa1272 - NorQ accessory protein for nitric oxide reductase, at 695,808 to 696,626
SMa1272
SMa1273: SMa1273 - NorB nitric oxide reductase, large subunit, at 696,686 to 698,032
SMa1273
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1 at 695.065 kb on + strand, within SMa1269 at 695.066 kb on - strand, within SMa1269 at 695.243 kb on + strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.347 kb on - strand, within SMa1269 at 695.347 kb on - strand, within SMa1269 at 695.741 kb on - strand at 695.805 kb on + strand at 695.806 kb on - strand at 695.810 kb on - strand at 695.945 kb on - strand, within SMa1272 at 695.945 kb on - strand, within SMa1272 at 696.000 kb on + strand, within SMa1272 at 696.310 kb on + strand, within SMa1272 at 696.464 kb on + strand, within SMa1272 at 696.574 kb on + strand at 696.626 kb on + strand at 696.632 kb on - strand at 696.725 kb on - strand at 696.779 kb on + strand at 696.779 kb on + strand at 696.780 kb on - strand at 696.967 kb on - strand, within SMa1273 at 696.967 kb on - strand, within SMa1273 at 696.967 kb on - strand, within SMa1273 at 697.000 kb on - strand, within SMa1273 at 697.029 kb on + strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.030 kb on - strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.086 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.089 kb on + strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.090 kb on - strand, within SMa1273 at 697.108 kb on + strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.315 kb on - strand, within SMa1273 at 697.317 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.371 kb on + strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.372 kb on - strand, within SMa1273 at 697.485 kb on + strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.486 kb on - strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.494 kb on + strand, within SMa1273 at 697.495 kb on - strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.527 kb on + strand, within SMa1273 at 697.611 kb on - strand, within SMa1273
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 695,065 + SMa1269 0.61 -0.4 695,066 - SMa1269 0.61 -0.0 695,243 + SMa1269 0.70 +0.8 695,244 - SMa1269 0.70 -0.6 695,244 - SMa1269 0.70 +1.0 695,244 - SMa1269 0.70 +0.4 695,347 - SMa1269 0.76 -0.1 695,347 - SMa1269 0.76 -0.1 695,741 - +0.9 695,805 + +0.5 695,806 - +0.8 695,810 - -0.0 695,945 - SMa1272 0.17 -0.0 695,945 - SMa1272 0.17 -0.6 696,000 + SMa1272 0.23 +0.2 696,310 + SMa1272 0.61 -1.1 696,464 + SMa1272 0.80 -0.5 696,574 + +1.3 696,626 + -1.0 696,632 - -0.0 696,725 - +0.9 696,779 + +0.8 696,779 + -0.4 696,780 - +0.4 696,967 - SMa1273 0.21 +0.1 696,967 - SMa1273 0.21 +0.2 696,967 - SMa1273 0.21 -0.3 697,000 - SMa1273 0.23 -0.7 697,029 + SMa1273 0.25 -0.7 697,030 - SMa1273 0.26 -1.2 697,030 - SMa1273 0.26 +0.7 697,030 - SMa1273 0.26 +1.5 697,086 + SMa1273 0.30 -0.1 697,086 + SMa1273 0.30 -0.3 697,089 + SMa1273 0.30 -1.8 697,089 + SMa1273 0.30 -0.1 697,090 - SMa1273 0.30 -1.1 697,090 - SMa1273 0.30 +0.1 697,090 - SMa1273 0.30 -0.4 697,090 - SMa1273 0.30 -0.0 697,090 - SMa1273 0.30 +0.3 697,108 + SMa1273 0.31 +0.8 697,315 - SMa1273 0.47 +0.1 697,315 - SMa1273 0.47 +0.1 697,317 + SMa1273 0.47 +0.3 697,371 + SMa1273 0.51 -0.3 697,371 + SMa1273 0.51 +0.2 697,371 + SMa1273 0.51 -0.3 697,371 + SMa1273 0.51 +0.1 697,372 - SMa1273 0.51 -0.4 697,372 - SMa1273 0.51 -0.1 697,372 - SMa1273 0.51 +0.8 697,372 - SMa1273 0.51 +0.1 697,485 + SMa1273 0.59 +0.2 697,486 - SMa1273 0.59 +0.3 697,486 - SMa1273 0.59 -0.1 697,494 + SMa1273 0.60 -0.1 697,494 + SMa1273 0.60 -0.4 697,495 - SMa1273 0.60 -1.0 697,527 + SMa1273 0.62 -0.1 697,527 + SMa1273 0.62 -0.2 697,611 - SMa1273 0.69 +1.0
Or see this region's nucleotide sequence