Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21091 and SM_b21092 are separated by 4 nucleotides SM_b21092 and SM_b21093 are separated by 24 nucleotides SM_b21093 and SM_b21094 are separated by 194 nucleotides
SM_b21091: SM_b21091 - cell-wall lytic enzyme, muramidase (lysozyme) protein, at 733,897 to 734,907
_b21091
SM_b21092: SM_b21092 - acetyltransferase, at 734,912 to 735,388
_b21092
SM_b21093: SM_b21093 - LysR family transcriptional regulator, at 735,413 to 736,315
_b21093
SM_b21094: SM_b21094 - argininosuccinate lyase, at 736,510 to 737,976
_b21094
Position (kb) 735
736
737 Strain fitness (log2 ratio) -1
0
1
2 at 735.125 kb on + strand, within SM_b21092 at 735.170 kb on + strand, within SM_b21092 at 735.171 kb on - strand, within SM_b21092 at 735.305 kb on + strand, within SM_b21092 at 735.306 kb on - strand, within SM_b21092 at 735.323 kb on - strand, within SM_b21092 at 735.577 kb on + strand, within SM_b21093 at 735.639 kb on + strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.702 kb on + strand, within SM_b21093 at 735.703 kb on - strand, within SM_b21093 at 735.703 kb on - strand, within SM_b21093 at 735.792 kb on + strand, within SM_b21093 at 735.792 kb on + strand, within SM_b21093 at 735.793 kb on - strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.835 kb on - strand, within SM_b21093 at 735.878 kb on + strand, within SM_b21093 at 735.878 kb on + strand, within SM_b21093 at 735.879 kb on - strand, within SM_b21093 at 736.099 kb on + strand, within SM_b21093 at 736.101 kb on + strand, within SM_b21093 at 736.101 kb on + strand, within SM_b21093 at 736.102 kb on - strand, within SM_b21093 at 736.102 kb on - strand, within SM_b21093 at 736.389 kb on - strand at 736.389 kb on - strand at 736.393 kb on - strand at 736.609 kb on + strand at 736.773 kb on + strand, within SM_b21094 at 736.877 kb on - strand, within SM_b21094 at 736.956 kb on + strand, within SM_b21094 at 736.956 kb on + strand, within SM_b21094 at 736.980 kb on + strand, within SM_b21094 at 736.981 kb on - strand, within SM_b21094 at 737.240 kb on + strand, within SM_b21094 at 737.240 kb on + strand, within SM_b21094 at 737.240 kb on + strand, within SM_b21094 at 737.240 kb on + strand, within SM_b21094 at 737.240 kb on + strand, within SM_b21094 at 737.240 kb on + strand, within SM_b21094 at 737.241 kb on - strand, within SM_b21094 at 737.301 kb on + strand, within SM_b21094 at 737.301 kb on + strand, within SM_b21094 at 737.302 kb on - strand, within SM_b21094
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 735,125 + SM_b21092 0.45 -0.8 735,170 + SM_b21092 0.54 +1.0 735,171 - SM_b21092 0.54 +0.3 735,305 + SM_b21092 0.82 -0.1 735,306 - SM_b21092 0.83 -0.6 735,323 - SM_b21092 0.86 -0.2 735,577 + SM_b21093 0.18 +0.7 735,639 + SM_b21093 0.25 -0.1 735,640 - SM_b21093 0.25 -0.1 735,640 - SM_b21093 0.25 -0.3 735,640 - SM_b21093 0.25 -0.3 735,702 + SM_b21093 0.32 -0.1 735,703 - SM_b21093 0.32 -0.6 735,703 - SM_b21093 0.32 -0.2 735,792 + SM_b21093 0.42 -0.3 735,792 + SM_b21093 0.42 -0.3 735,793 - SM_b21093 0.42 -0.1 735,834 + SM_b21093 0.47 -1.2 735,834 + SM_b21093 0.47 -0.7 735,834 + +0.3 735,834 + SM_b21093 0.47 -0.7 735,834 + SM_b21093 0.47 -0.1 735,834 + SM_b21093 0.47 -1.3 735,835 - SM_b21093 0.47 +0.3 735,878 + SM_b21093 0.51 +0.4 735,878 + SM_b21093 0.51 +1.6 735,879 - SM_b21093 0.52 -1.0 736,099 + SM_b21093 0.76 -0.1 736,101 + SM_b21093 0.76 +0.1 736,101 + SM_b21093 0.76 -1.3 736,102 - SM_b21093 0.76 -0.8 736,102 - SM_b21093 0.76 -0.2 736,389 - -0.2 736,389 - -1.6 736,393 - -0.8 736,609 + +0.6 736,773 + SM_b21094 0.18 -0.2 736,877 - SM_b21094 0.25 +0.7 736,956 + SM_b21094 0.30 -0.4 736,956 + SM_b21094 0.30 -0.2 736,980 + SM_b21094 0.32 +1.2 736,981 - SM_b21094 0.32 +0.9 737,240 + SM_b21094 0.50 -1.2 737,240 + SM_b21094 0.50 +0.3 737,240 + SM_b21094 0.50 -0.5 737,240 + SM_b21094 0.50 +2.3 737,240 + SM_b21094 0.50 -0.0 737,240 + SM_b21094 0.50 -0.4 737,241 - SM_b21094 0.50 -0.8 737,301 + SM_b21094 0.54 -1.0 737,301 + SM_b21094 0.54 +0.9 737,302 - SM_b21094 0.54 -1.7
Or see this region's nucleotide sequence