Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20508 and SM_b20509 are separated by 188 nucleotides SM_b20509 and SM_b20510 are separated by 46 nucleotides
SM_b20508: SM_b20508 - sugar ABC transporter substrate-binding protein, at 530,452 to 531,435
_b20508
SM_b20509: SM_b20509 - transcriptional regulator, at 531,624 to 532,391
_b20509
SM_b20510: SM_b20510 - galactonate dehydratase, at 532,438 to 533,586
_b20510
Position (kb) 531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 530.942 kb on + strand, within SM_b20508 at 530.943 kb on - strand, within SM_b20508 at 531.048 kb on + strand, within SM_b20508 at 531.229 kb on + strand, within SM_b20508 at 531.358 kb on + strand at 531.426 kb on + strand at 531.426 kb on + strand at 531.480 kb on + strand at 531.480 kb on + strand at 531.910 kb on + strand, within SM_b20509 at 531.910 kb on + strand, within SM_b20509 at 531.974 kb on + strand, within SM_b20509 at 532.462 kb on + strand at 532.462 kb on + strand at 532.463 kb on - strand at 532.464 kb on + strand at 532.464 kb on + strand at 532.464 kb on + strand at 532.674 kb on + strand, within SM_b20510 at 532.674 kb on + strand, within SM_b20510 at 532.675 kb on - strand, within SM_b20510 at 532.675 kb on - strand, within SM_b20510 at 532.786 kb on + strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.873 kb on - strand, within SM_b20510 at 532.873 kb on - strand, within SM_b20510 at 532.913 kb on - strand, within SM_b20510 at 533.150 kb on - strand, within SM_b20510 at 533.270 kb on - strand, within SM_b20510 at 533.270 kb on - strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.348 kb on - strand, within SM_b20510 at 533.348 kb on - strand, within SM_b20510 at 533.349 kb on + strand, within SM_b20510 at 533.350 kb on - strand, within SM_b20510 at 533.350 kb on - strand, within SM_b20510
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 530,942 + SM_b20508 0.50 -0.3 530,943 - SM_b20508 0.50 -0.6 531,048 + SM_b20508 0.61 +2.0 531,229 + SM_b20508 0.79 +0.2 531,358 + +0.0 531,426 + -0.8 531,426 + -0.1 531,480 + -1.0 531,480 + -0.7 531,910 + SM_b20509 0.37 -1.0 531,910 + SM_b20509 0.37 -1.6 531,974 + SM_b20509 0.46 -0.8 532,462 + +0.3 532,462 + +0.8 532,463 - +0.5 532,464 + +1.0 532,464 + -0.1 532,464 + +0.5 532,674 + SM_b20510 0.21 +0.1 532,674 + SM_b20510 0.21 -0.0 532,675 - SM_b20510 0.21 +0.9 532,675 - SM_b20510 0.21 -0.0 532,786 + SM_b20510 0.30 -0.2 532,787 - SM_b20510 0.30 -0.3 532,787 - SM_b20510 0.30 +0.2 532,787 - SM_b20510 0.30 -4.4 532,873 - SM_b20510 0.38 +0.2 532,873 - SM_b20510 0.38 +0.4 532,913 - SM_b20510 0.41 +0.5 533,150 - SM_b20510 0.62 -0.1 533,270 - SM_b20510 0.72 +0.2 533,270 - SM_b20510 0.72 +0.4 533,347 + SM_b20510 0.79 +0.1 533,347 + SM_b20510 0.79 +0.6 533,347 + SM_b20510 0.79 +0.8 533,348 - SM_b20510 0.79 +1.5 533,348 - SM_b20510 0.79 -0.8 533,349 + SM_b20510 0.79 -0.4 533,350 - SM_b20510 0.79 +0.4 533,350 - SM_b20510 0.79 +0.8
Or see this region's nucleotide sequence