Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19600 and RS_RS19605 overlap by 4 nucleotides RS_RS19605 and RS_RS19610 are separated by 225 nucleotides
RS_RS19600: RS_RS19600 - hypothetical protein, at 631,153 to 633,249
_RS19600
RS_RS19605: RS_RS19605 - bacteriophage N4 adsorption protein A, at 633,246 to 635,003
_RS19605
RS_RS19610: RS_RS19610 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 635,229 to 636,479
_RS19610
Position (kb) 633
634
635
636 Strain fitness (log2 ratio) -2
-1
0
1 at 632.287 kb on + strand, within RS_RS19600 at 632.287 kb on + strand, within RS_RS19600 at 632.287 kb on + strand, within RS_RS19600 at 632.288 kb on - strand, within RS_RS19600 at 632.288 kb on - strand, within RS_RS19600 at 632.305 kb on + strand, within RS_RS19600 at 632.305 kb on + strand, within RS_RS19600 at 632.306 kb on - strand, within RS_RS19600 at 632.306 kb on - strand, within RS_RS19600 at 632.444 kb on - strand, within RS_RS19600 at 632.444 kb on - strand, within RS_RS19600 at 632.560 kb on + strand, within RS_RS19600 at 632.560 kb on + strand, within RS_RS19600 at 632.561 kb on - strand, within RS_RS19600 at 632.608 kb on + strand, within RS_RS19600 at 632.608 kb on + strand, within RS_RS19600 at 632.609 kb on - strand, within RS_RS19600 at 632.609 kb on - strand, within RS_RS19600 at 632.609 kb on - strand, within RS_RS19600 at 632.609 kb on - strand, within RS_RS19600 at 632.929 kb on - strand, within RS_RS19600 at 633.726 kb on + strand, within RS_RS19605 at 633.903 kb on + strand, within RS_RS19605 at 634.386 kb on + strand, within RS_RS19605 at 634.386 kb on + strand, within RS_RS19605 at 634.387 kb on - strand, within RS_RS19605 at 634.521 kb on + strand, within RS_RS19605 at 634.522 kb on - strand, within RS_RS19605 at 634.522 kb on - strand, within RS_RS19605 at 634.522 kb on - strand, within RS_RS19605 at 634.522 kb on - strand, within RS_RS19605 at 634.695 kb on + strand, within RS_RS19605 at 634.695 kb on + strand, within RS_RS19605 at 634.695 kb on + strand, within RS_RS19605 at 634.696 kb on - strand, within RS_RS19605 at 634.696 kb on - strand, within RS_RS19605 at 634.696 kb on - strand, within RS_RS19605 at 634.696 kb on - strand, within RS_RS19605 at 634.875 kb on + strand at 634.875 kb on + strand at 634.896 kb on + strand at 635.553 kb on + strand, within RS_RS19610 at 635.554 kb on - strand, within RS_RS19610 at 635.823 kb on + strand, within RS_RS19610 at 635.824 kb on - strand, within RS_RS19610
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days remove 632,287 + RS_RS19600 0.54 -0.2 632,287 + RS_RS19600 0.54 -0.4 632,287 + RS_RS19600 0.54 -0.2 632,288 - RS_RS19600 0.54 +0.8 632,288 - RS_RS19600 0.54 +0.4 632,305 + RS_RS19600 0.55 -0.3 632,305 + RS_RS19600 0.55 -0.4 632,306 - RS_RS19600 0.55 -0.4 632,306 - RS_RS19600 0.55 -0.5 632,444 - RS_RS19600 0.62 -1.3 632,444 - RS_RS19600 0.62 -0.2 632,560 + RS_RS19600 0.67 -2.2 632,560 + RS_RS19600 0.67 -0.8 632,561 - RS_RS19600 0.67 -0.3 632,608 + RS_RS19600 0.69 -0.1 632,608 + RS_RS19600 0.69 -0.0 632,609 - RS_RS19600 0.69 +0.4 632,609 - RS_RS19600 0.69 +1.2 632,609 - RS_RS19600 0.69 -1.0 632,609 - RS_RS19600 0.69 -2.0 632,929 - RS_RS19600 0.85 +1.0 633,726 + RS_RS19605 0.27 -1.0 633,903 + RS_RS19605 0.37 -0.7 634,386 + RS_RS19605 0.65 -0.9 634,386 + RS_RS19605 0.65 -0.6 634,387 - RS_RS19605 0.65 -0.4 634,521 + RS_RS19605 0.73 -0.7 634,522 - RS_RS19605 0.73 -0.2 634,522 - RS_RS19605 0.73 +0.1 634,522 - RS_RS19605 0.73 -0.7 634,522 - RS_RS19605 0.73 +1.4 634,695 + RS_RS19605 0.82 -0.1 634,695 + RS_RS19605 0.82 -2.0 634,695 + RS_RS19605 0.82 +0.4 634,696 - RS_RS19605 0.82 +0.9 634,696 - RS_RS19605 0.82 -1.2 634,696 - RS_RS19605 0.82 -0.7 634,696 - RS_RS19605 0.82 -1.0 634,875 + -0.6 634,875 + +1.4 634,896 + -0.4 635,553 + RS_RS19610 0.26 -1.1 635,554 - RS_RS19610 0.26 -0.9 635,823 + RS_RS19610 0.47 -0.2 635,824 - RS_RS19610 0.48 -1.0
Or see this region's nucleotide sequence