Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4024

Experiment: KB with Levodopa 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4023 and Psyr_4024 overlap by 4 nucleotidesPsyr_4024 and Psyr_4025 overlap by 4 nucleotides Psyr_4023: Psyr_4023 - conserved hypothetical protein, at 4,790,447 to 4,792,036 _4023 Psyr_4024: Psyr_4024 - conserved hypothetical protein, at 4,792,033 to 4,793,250 _4024 Psyr_4025: Psyr_4025 - ATPase, at 4,793,247 to 4,794,287 _4025 Position (kb) 4792 4793 4794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strandat 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.119 kb on + strand, within Psyr_4023at 4791.119 kb on + strand, within Psyr_4023at 4791.119 kb on + strand, within Psyr_4023at 4791.120 kb on - strand, within Psyr_4023at 4791.120 kb on - strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.203 kb on + strand, within Psyr_4023at 4791.203 kb on + strand, within Psyr_4023at 4791.203 kb on + strand, within Psyr_4023at 4791.210 kb on + strand, within Psyr_4023at 4791.232 kb on - strand, within Psyr_4023at 4791.275 kb on + strand, within Psyr_4023at 4791.276 kb on - strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.597 kb on + strand, within Psyr_4023at 4791.598 kb on - strand, within Psyr_4023at 4792.221 kb on + strand, within Psyr_4024at 4792.438 kb on + strand, within Psyr_4024at 4792.438 kb on + strand, within Psyr_4024at 4792.439 kb on - strand, within Psyr_4024at 4792.538 kb on + strand, within Psyr_4024at 4792.538 kb on + strand, within Psyr_4024at 4792.539 kb on - strand, within Psyr_4024at 4792.539 kb on - strand, within Psyr_4024at 4792.565 kb on - strand, within Psyr_4024at 4792.565 kb on - strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.685 kb on + strand, within Psyr_4024at 4792.685 kb on + strand, within Psyr_4024at 4792.756 kb on + strand, within Psyr_4024at 4792.756 kb on + strand, within Psyr_4024at 4792.757 kb on - strand, within Psyr_4024at 4792.781 kb on - strand, within Psyr_4024at 4792.858 kb on + strand, within Psyr_4024at 4792.858 kb on + strand, within Psyr_4024at 4792.859 kb on - strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.216 kb on + strandat 4793.217 kb on - strandat 4793.217 kb on - strandat 4793.541 kb on - strand, within Psyr_4025at 4793.583 kb on + strand, within Psyr_4025at 4793.583 kb on + strand, within Psyr_4025at 4793.584 kb on - strand, within Psyr_4025at 4793.584 kb on - strand, within Psyr_4025at 4793.584 kb on - strand, within Psyr_4025at 4793.799 kb on + strand, within Psyr_4025at 4793.800 kb on - strand, within Psyr_4025at 4794.018 kb on + strand, within Psyr_4025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM
remove
4,791,063 - Psyr_4023 0.39 +1.8
4,791,063 - Psyr_4023 0.39 -0.9
4,791,063 - Psyr_4023 0.39 +0.0
4,791,063 - Psyr_4023 0.39 +0.2
4,791,093 + Psyr_4023 0.41 -0.7
4,791,093 + Psyr_4023 0.41 +1.4
4,791,093 + Psyr_4023 0.41 -0.4
4,791,093 + Psyr_4023 0.41 -0.4
4,791,093 + Psyr_4023 0.41 -0.9
4,791,093 + Psyr_4023 0.41 -0.6
4,791,093 + Psyr_4023 0.41 -0.9
4,791,093 + Psyr_4023 0.41 -0.8
4,791,093 + Psyr_4023 0.41 -1.7
4,791,093 + +1.0
4,791,093 + Psyr_4023 0.41 -0.6
4,791,093 + Psyr_4023 0.41 +0.5
4,791,093 + Psyr_4023 0.41 +0.2
4,791,093 + Psyr_4023 0.41 +0.0
4,791,093 + Psyr_4023 0.41 -0.5
4,791,093 + Psyr_4023 0.41 +0.3
4,791,093 + Psyr_4023 0.41 +0.6
4,791,093 + Psyr_4023 0.41 -1.1
4,791,093 + Psyr_4023 0.41 +0.5
4,791,093 + Psyr_4023 0.41 +2.0
4,791,093 + Psyr_4023 0.41 +1.0
4,791,093 + Psyr_4023 0.41 -0.1
4,791,094 - Psyr_4023 0.41 -1.4
4,791,094 - Psyr_4023 0.41 -0.5
4,791,094 - Psyr_4023 0.41 +0.3
4,791,094 - Psyr_4023 0.41 -0.8
4,791,094 - Psyr_4023 0.41 -0.9
4,791,094 - Psyr_4023 0.41 -0.6
4,791,094 - Psyr_4023 0.41 -0.6
4,791,094 - Psyr_4023 0.41 -0.1
4,791,094 - Psyr_4023 0.41 -1.8
4,791,094 - Psyr_4023 0.41 -0.2
4,791,094 - Psyr_4023 0.41 +0.3
4,791,094 - Psyr_4023 0.41 -0.1
4,791,094 - Psyr_4023 0.41 +1.0
4,791,094 - Psyr_4023 0.41 -0.7
4,791,094 - Psyr_4023 0.41 +0.2
4,791,094 - Psyr_4023 0.41 -1.1
4,791,095 + Psyr_4023 0.41 -0.8
4,791,095 + Psyr_4023 0.41 -0.2
4,791,095 + Psyr_4023 0.41 +1.8
4,791,095 + Psyr_4023 0.41 +0.6
4,791,095 + Psyr_4023 0.41 -1.7
4,791,095 + Psyr_4023 0.41 -1.1
4,791,095 + Psyr_4023 0.41 -2.5
4,791,095 + Psyr_4023 0.41 -0.3
4,791,095 + Psyr_4023 0.41 +1.8
4,791,095 + Psyr_4023 0.41 +0.3
4,791,095 + Psyr_4023 0.41 +0.8
4,791,095 + Psyr_4023 0.41 +0.8
4,791,095 + Psyr_4023 0.41 -1.5
4,791,095 + Psyr_4023 0.41 +2.0
4,791,095 + Psyr_4023 0.41 +0.1
4,791,095 + Psyr_4023 0.41 -0.4
4,791,095 + Psyr_4023 0.41 -0.1
4,791,095 + Psyr_4023 0.41 -0.8
4,791,095 + Psyr_4023 0.41 -1.0
4,791,095 + Psyr_4023 0.41 +1.3
4,791,095 + Psyr_4023 0.41 +0.7
4,791,095 + Psyr_4023 0.41 -1.2
4,791,095 + Psyr_4023 0.41 -0.2
4,791,096 - Psyr_4023 0.41 -0.9
4,791,096 - Psyr_4023 0.41 -1.3
4,791,096 - Psyr_4023 0.41 -0.4
4,791,096 - Psyr_4023 0.41 -0.7
4,791,096 - Psyr_4023 0.41 +0.2
4,791,096 - Psyr_4023 0.41 -0.1
4,791,096 - Psyr_4023 0.41 -0.3
4,791,096 - Psyr_4023 0.41 +0.6
4,791,096 - Psyr_4023 0.41 -1.4
4,791,096 - Psyr_4023 0.41 +0.5
4,791,119 + Psyr_4023 0.42 -0.0
4,791,119 + Psyr_4023 0.42 -0.9
4,791,119 + Psyr_4023 0.42 +1.4
4,791,120 - Psyr_4023 0.42 -1.0
4,791,120 - Psyr_4023 0.42 +0.6
4,791,156 + Psyr_4023 0.45 +0.3
4,791,156 + Psyr_4023 0.45 +0.0
4,791,156 + Psyr_4023 0.45 -1.1
4,791,156 + Psyr_4023 0.45 -0.9
4,791,156 + Psyr_4023 0.45 +0.5
4,791,156 + Psyr_4023 0.45 +0.1
4,791,156 + Psyr_4023 0.45 +0.1
4,791,156 + Psyr_4023 0.45 +0.9
4,791,157 - Psyr_4023 0.45 +0.0
4,791,157 - Psyr_4023 0.45 -1.3
4,791,157 - Psyr_4023 0.45 -1.2
4,791,157 - Psyr_4023 0.45 +1.0
4,791,157 - Psyr_4023 0.45 -2.2
4,791,157 - Psyr_4023 0.45 +0.5
4,791,157 - Psyr_4023 0.45 -0.5
4,791,157 - Psyr_4023 0.45 -0.4
4,791,203 + Psyr_4023 0.48 +2.2
4,791,203 + Psyr_4023 0.48 -1.1
4,791,203 + Psyr_4023 0.48 -1.0
4,791,210 + Psyr_4023 0.48 +1.0
4,791,232 - Psyr_4023 0.49 +0.2
4,791,275 + Psyr_4023 0.52 -0.2
4,791,276 - Psyr_4023 0.52 -2.0
4,791,567 + Psyr_4023 0.70 +0.3
4,791,567 + Psyr_4023 0.70 -3.0
4,791,567 + Psyr_4023 0.70 +0.3
4,791,567 + Psyr_4023 0.70 -0.8
4,791,567 + Psyr_4023 0.70 -0.6
4,791,568 - Psyr_4023 0.71 -0.1
4,791,568 - Psyr_4023 0.71 +0.4
4,791,568 - Psyr_4023 0.71 +1.7
4,791,597 + Psyr_4023 0.72 -0.4
4,791,598 - Psyr_4023 0.72 -0.6
4,792,221 + Psyr_4024 0.15 -0.9
4,792,438 + Psyr_4024 0.33 -0.7
4,792,438 + Psyr_4024 0.33 +0.9
4,792,439 - Psyr_4024 0.33 +0.5
4,792,538 + Psyr_4024 0.41 -0.6
4,792,538 + Psyr_4024 0.41 +0.3
4,792,539 - Psyr_4024 0.42 +0.5
4,792,539 - Psyr_4024 0.42 -0.2
4,792,565 - Psyr_4024 0.44 +1.2
4,792,565 - Psyr_4024 0.44 -1.1
4,792,592 - Psyr_4024 0.46 -0.0
4,792,592 - Psyr_4024 0.46 -0.2
4,792,685 + Psyr_4024 0.54 -0.5
4,792,685 + Psyr_4024 0.54 +0.0
4,792,756 + Psyr_4024 0.59 -0.3
4,792,756 + Psyr_4024 0.59 +1.8
4,792,757 - Psyr_4024 0.59 -0.6
4,792,781 - Psyr_4024 0.61 +1.6
4,792,858 + Psyr_4024 0.68 +0.7
4,792,858 + Psyr_4024 0.68 -0.8
4,792,859 - Psyr_4024 0.68 -0.5
4,793,051 + Psyr_4024 0.84 +0.9
4,793,051 + Psyr_4024 0.84 -0.4
4,793,051 + Psyr_4024 0.84 +1.7
4,793,051 + Psyr_4024 0.84 -0.3
4,793,051 + Psyr_4024 0.84 +0.0
4,793,051 + Psyr_4024 0.84 +0.3
4,793,051 + Psyr_4024 0.84 -0.7
4,793,051 + Psyr_4024 0.84 +0.8
4,793,051 + Psyr_4024 0.84 -0.2
4,793,051 + Psyr_4024 0.84 -0.4
4,793,052 - Psyr_4024 0.84 +0.9
4,793,052 - Psyr_4024 0.84 -1.0
4,793,052 - Psyr_4024 0.84 -1.6
4,793,052 - Psyr_4024 0.84 +0.5
4,793,052 - Psyr_4024 0.84 +0.0
4,793,216 + -2.7
4,793,217 - -0.6
4,793,217 - +0.4
4,793,541 - Psyr_4025 0.28 +1.5
4,793,583 + Psyr_4025 0.32 +0.1
4,793,583 + Psyr_4025 0.32 -0.6
4,793,584 - Psyr_4025 0.32 +0.7
4,793,584 - Psyr_4025 0.32 -1.6
4,793,584 - Psyr_4025 0.32 -0.8
4,793,799 + Psyr_4025 0.53 -1.5
4,793,800 - Psyr_4025 0.53 -2.4
4,794,018 + Psyr_4025 0.74 -0.1

Or see this region's nucleotide sequence