Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3924 and Psyr_3925 are separated by 154 nucleotides Psyr_3925 and Psyr_3926 are separated by 87 nucleotides Psyr_3926 and Psyr_3927 overlap by 4 nucleotides
Psyr_3924: Psyr_3924 - conserved hypothetical protein, at 4,666,828 to 4,667,541
_3924
Psyr_3925: Psyr_3925 - conserved hypothetical protein, at 4,667,696 to 4,670,833
_3925
Psyr_3926: Psyr_3926 - transcriptional regulator, PadR family, at 4,670,921 to 4,671,511
_3926
Psyr_3927: Psyr_3927 - Siderophore-interacting protein, at 4,671,508 to 4,672,275
_3927
Position (kb) 4667
4668
4669
4670
4671 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4666.735 kb on + strand at 4666.763 kb on - strand at 4666.797 kb on + strand at 4666.797 kb on + strand at 4666.798 kb on - strand at 4666.798 kb on - strand at 4666.798 kb on - strand at 4666.801 kb on + strand at 4666.824 kb on + strand at 4666.844 kb on + strand at 4666.844 kb on + strand at 4666.969 kb on + strand, within Psyr_3924 at 4666.969 kb on + strand, within Psyr_3924 at 4666.969 kb on + strand, within Psyr_3924 at 4666.970 kb on - strand, within Psyr_3924 at 4667.040 kb on + strand, within Psyr_3924 at 4667.040 kb on + strand, within Psyr_3924 at 4667.041 kb on - strand, within Psyr_3924 at 4667.073 kb on + strand, within Psyr_3924 at 4667.073 kb on + strand, within Psyr_3924 at 4667.074 kb on - strand, within Psyr_3924 at 4667.078 kb on - strand, within Psyr_3924 at 4667.078 kb on - strand, within Psyr_3924 at 4667.125 kb on + strand, within Psyr_3924 at 4667.162 kb on - strand, within Psyr_3924 at 4667.166 kb on + strand, within Psyr_3924 at 4667.167 kb on - strand, within Psyr_3924 at 4667.184 kb on + strand, within Psyr_3924 at 4667.269 kb on + strand, within Psyr_3924 at 4667.269 kb on + strand, within Psyr_3924 at 4667.269 kb on + strand, within Psyr_3924 at 4667.270 kb on - strand, within Psyr_3924 at 4667.270 kb on - strand, within Psyr_3924 at 4667.356 kb on + strand, within Psyr_3924 at 4667.356 kb on + strand, within Psyr_3924 at 4667.357 kb on - strand, within Psyr_3924 at 4667.402 kb on - strand, within Psyr_3924 at 4667.402 kb on - strand, within Psyr_3924 at 4667.402 kb on - strand, within Psyr_3924 at 4667.445 kb on + strand, within Psyr_3924 at 4667.446 kb on - strand, within Psyr_3924 at 4667.473 kb on + strand at 4667.585 kb on + strand at 4667.585 kb on + strand at 4667.585 kb on + strand at 4667.585 kb on + strand at 4667.585 kb on + strand at 4667.669 kb on + strand at 4667.670 kb on - strand at 4667.714 kb on - strand at 4667.782 kb on + strand at 4667.782 kb on + strand at 4667.975 kb on + strand at 4668.012 kb on - strand, within Psyr_3925 at 4668.056 kb on + strand, within Psyr_3925 at 4668.057 kb on - strand, within Psyr_3925 at 4668.101 kb on + strand, within Psyr_3925 at 4668.102 kb on - strand, within Psyr_3925 at 4668.128 kb on + strand, within Psyr_3925 at 4668.128 kb on + strand, within Psyr_3925 at 4668.423 kb on - strand, within Psyr_3925 at 4668.881 kb on + strand, within Psyr_3925 at 4668.882 kb on - strand, within Psyr_3925 at 4669.056 kb on - strand, within Psyr_3925 at 4669.148 kb on + strand, within Psyr_3925 at 4669.289 kb on + strand, within Psyr_3925 at 4669.289 kb on + strand, within Psyr_3925 at 4669.289 kb on + strand, within Psyr_3925 at 4669.290 kb on - strand, within Psyr_3925 at 4669.290 kb on - strand, within Psyr_3925 at 4669.290 kb on - strand, within Psyr_3925 at 4669.290 kb on - strand, within Psyr_3925 at 4669.401 kb on - strand, within Psyr_3925 at 4669.401 kb on - strand, within Psyr_3925 at 4669.463 kb on + strand, within Psyr_3925 at 4669.463 kb on + strand, within Psyr_3925 at 4669.463 kb on + strand, within Psyr_3925 at 4669.463 kb on + strand at 4669.463 kb on + strand, within Psyr_3925 at 4669.463 kb on + strand, within Psyr_3925 at 4669.463 kb on + strand, within Psyr_3925 at 4669.464 kb on - strand, within Psyr_3925 at 4669.464 kb on - strand, within Psyr_3925 at 4669.519 kb on + strand, within Psyr_3925 at 4669.519 kb on + strand, within Psyr_3925 at 4669.623 kb on - strand, within Psyr_3925 at 4669.631 kb on + strand, within Psyr_3925 at 4669.631 kb on + strand, within Psyr_3925 at 4669.632 kb on - strand, within Psyr_3925 at 4669.632 kb on - strand, within Psyr_3925 at 4669.632 kb on - strand, within Psyr_3925 at 4669.694 kb on + strand, within Psyr_3925 at 4669.694 kb on + strand, within Psyr_3925 at 4669.728 kb on + strand, within Psyr_3925 at 4669.754 kb on + strand, within Psyr_3925 at 4669.754 kb on + strand, within Psyr_3925 at 4669.755 kb on - strand, within Psyr_3925 at 4669.755 kb on - strand, within Psyr_3925 at 4669.842 kb on - strand, within Psyr_3925 at 4669.949 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.973 kb on + strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.974 kb on - strand, within Psyr_3925 at 4669.994 kb on + strand, within Psyr_3925 at 4669.994 kb on + strand, within Psyr_3925 at 4669.994 kb on + strand, within Psyr_3925 at 4669.995 kb on - strand, within Psyr_3925 at 4669.995 kb on - strand, within Psyr_3925 at 4669.995 kb on - strand, within Psyr_3925 at 4670.108 kb on + strand, within Psyr_3925 at 4670.109 kb on - strand, within Psyr_3925 at 4670.378 kb on + strand, within Psyr_3925 at 4670.378 kb on + strand, within Psyr_3925 at 4670.379 kb on - strand, within Psyr_3925 at 4670.642 kb on + strand at 4670.642 kb on + strand at 4670.643 kb on - strand at 4670.643 kb on - strand at 4670.769 kb on - strand at 4670.893 kb on - strand at 4670.903 kb on + strand at 4670.932 kb on + strand at 4670.932 kb on + strand at 4670.933 kb on - strand at 4671.070 kb on - strand, within Psyr_3926 at 4671.166 kb on + strand, within Psyr_3926 at 4671.171 kb on - strand, within Psyr_3926 at 4671.171 kb on - strand, within Psyr_3926 at 4671.239 kb on + strand, within Psyr_3926 at 4671.240 kb on - strand, within Psyr_3926 at 4671.610 kb on - strand, within Psyr_3927
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 4,666,735 + +0.2 4,666,763 - +0.8 4,666,797 + -1.3 4,666,797 + +3.6 4,666,798 - +0.4 4,666,798 - +0.9 4,666,798 - +0.8 4,666,801 + +0.8 4,666,824 + -0.9 4,666,844 + +0.1 4,666,844 + -1.5 4,666,969 + Psyr_3924 0.20 -0.2 4,666,969 + Psyr_3924 0.20 -2.1 4,666,969 + Psyr_3924 0.20 -0.3 4,666,970 - Psyr_3924 0.20 -0.8 4,667,040 + Psyr_3924 0.30 -1.1 4,667,040 + Psyr_3924 0.30 -1.8 4,667,041 - Psyr_3924 0.30 +0.4 4,667,073 + Psyr_3924 0.34 -0.6 4,667,073 + Psyr_3924 0.34 -0.8 4,667,074 - Psyr_3924 0.34 +1.1 4,667,078 - Psyr_3924 0.35 -0.7 4,667,078 - Psyr_3924 0.35 -0.4 4,667,125 + Psyr_3924 0.42 -0.3 4,667,162 - Psyr_3924 0.47 +3.1 4,667,166 + Psyr_3924 0.47 -1.2 4,667,167 - Psyr_3924 0.47 +1.3 4,667,184 + Psyr_3924 0.50 +0.2 4,667,269 + Psyr_3924 0.62 -0.1 4,667,269 + Psyr_3924 0.62 -0.7 4,667,269 + Psyr_3924 0.62 +0.5 4,667,270 - Psyr_3924 0.62 +0.7 4,667,270 - Psyr_3924 0.62 +0.3 4,667,356 + Psyr_3924 0.74 -0.5 4,667,356 + Psyr_3924 0.74 -0.3 4,667,357 - Psyr_3924 0.74 -0.9 4,667,402 - Psyr_3924 0.80 -0.5 4,667,402 - Psyr_3924 0.80 +1.6 4,667,402 - Psyr_3924 0.80 -0.4 4,667,445 + Psyr_3924 0.86 +0.5 4,667,446 - Psyr_3924 0.87 -0.1 4,667,473 + -0.4 4,667,585 + +3.4 4,667,585 + -0.9 4,667,585 + +0.3 4,667,585 + -1.6 4,667,585 + -0.6 4,667,669 + -0.9 4,667,670 - -0.4 4,667,714 - -1.1 4,667,782 + +0.7 4,667,782 + +0.9 4,667,975 + -1.0 4,668,012 - Psyr_3925 0.10 +0.3 4,668,056 + Psyr_3925 0.11 +0.8 4,668,057 - Psyr_3925 0.12 -0.5 4,668,101 + Psyr_3925 0.13 -0.1 4,668,102 - Psyr_3925 0.13 +0.3 4,668,128 + Psyr_3925 0.14 +0.8 4,668,128 + Psyr_3925 0.14 -0.2 4,668,423 - Psyr_3925 0.23 +2.5 4,668,881 + Psyr_3925 0.38 -0.3 4,668,882 - Psyr_3925 0.38 +0.9 4,669,056 - Psyr_3925 0.43 +0.5 4,669,148 + Psyr_3925 0.46 -0.3 4,669,289 + Psyr_3925 0.51 -0.9 4,669,289 + Psyr_3925 0.51 -0.8 4,669,289 + Psyr_3925 0.51 +0.5 4,669,290 - Psyr_3925 0.51 -0.2 4,669,290 - Psyr_3925 0.51 -0.5 4,669,290 - Psyr_3925 0.51 +2.8 4,669,290 - Psyr_3925 0.51 +0.9 4,669,401 - Psyr_3925 0.54 -0.8 4,669,401 - Psyr_3925 0.54 +2.1 4,669,463 + Psyr_3925 0.56 -1.5 4,669,463 + Psyr_3925 0.56 +0.8 4,669,463 + Psyr_3925 0.56 +0.5 4,669,463 + +1.1 4,669,463 + Psyr_3925 0.56 -2.1 4,669,463 + Psyr_3925 0.56 +0.3 4,669,463 + Psyr_3925 0.56 -0.9 4,669,464 - Psyr_3925 0.56 +0.9 4,669,464 - Psyr_3925 0.56 +1.3 4,669,519 + Psyr_3925 0.58 -0.9 4,669,519 + Psyr_3925 0.58 -0.1 4,669,623 - Psyr_3925 0.61 +2.4 4,669,631 + Psyr_3925 0.62 +1.4 4,669,631 + Psyr_3925 0.62 -0.6 4,669,632 - Psyr_3925 0.62 +1.1 4,669,632 - Psyr_3925 0.62 +0.9 4,669,632 - Psyr_3925 0.62 +0.6 4,669,694 + Psyr_3925 0.64 +1.1 4,669,694 + Psyr_3925 0.64 +0.5 4,669,728 + Psyr_3925 0.65 -0.5 4,669,754 + Psyr_3925 0.66 +0.8 4,669,754 + Psyr_3925 0.66 +1.5 4,669,755 - Psyr_3925 0.66 +1.1 4,669,755 - Psyr_3925 0.66 -0.7 4,669,842 - Psyr_3925 0.68 -0.9 4,669,949 + Psyr_3925 0.72 -1.8 4,669,973 + Psyr_3925 0.73 -0.9 4,669,973 + Psyr_3925 0.73 -0.1 4,669,973 + Psyr_3925 0.73 -0.7 4,669,973 + Psyr_3925 0.73 +2.2 4,669,973 + Psyr_3925 0.73 -0.2 4,669,973 + Psyr_3925 0.73 -1.4 4,669,973 + Psyr_3925 0.73 +0.7 4,669,973 + Psyr_3925 0.73 +0.6 4,669,973 + Psyr_3925 0.73 +0.3 4,669,973 + Psyr_3925 0.73 -0.0 4,669,973 + Psyr_3925 0.73 +1.8 4,669,973 + Psyr_3925 0.73 +0.2 4,669,974 - Psyr_3925 0.73 +1.5 4,669,974 - Psyr_3925 0.73 +0.8 4,669,974 - Psyr_3925 0.73 -0.4 4,669,974 - Psyr_3925 0.73 -1.3 4,669,974 - Psyr_3925 0.73 +0.9 4,669,974 - Psyr_3925 0.73 -0.0 4,669,974 - Psyr_3925 0.73 -0.6 4,669,994 + Psyr_3925 0.73 -0.3 4,669,994 + Psyr_3925 0.73 -0.6 4,669,994 + Psyr_3925 0.73 -0.5 4,669,995 - Psyr_3925 0.73 -0.9 4,669,995 - Psyr_3925 0.73 -0.5 4,669,995 - Psyr_3925 0.73 +0.5 4,670,108 + Psyr_3925 0.77 +1.5 4,670,109 - Psyr_3925 0.77 +0.1 4,670,378 + Psyr_3925 0.85 -0.2 4,670,378 + Psyr_3925 0.85 -0.7 4,670,379 - Psyr_3925 0.86 -0.5 4,670,642 + -0.6 4,670,642 + +0.5 4,670,643 - +0.2 4,670,643 - +2.3 4,670,769 - -0.3 4,670,893 - -0.5 4,670,903 + +0.3 4,670,932 + +0.1 4,670,932 + -0.1 4,670,933 - -0.1 4,671,070 - Psyr_3926 0.25 +1.1 4,671,166 + Psyr_3926 0.41 -0.5 4,671,171 - Psyr_3926 0.42 +0.9 4,671,171 - Psyr_3926 0.42 +1.3 4,671,239 + Psyr_3926 0.54 -0.6 4,671,240 - Psyr_3926 0.54 +0.7 4,671,610 - Psyr_3927 0.13 -0.5
Or see this region's nucleotide sequence